View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_36 (Length: 347)
Name: NF19267_high_36
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 17496750 - 17496522
Alignment:
| Q |
20 |
gagaaaaaatataagaaagttggatctttactctttttctataggagaattctttgttaattaccctaacaaaattacctaaaga-tcaattttattaaa |
118 |
Q |
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| T |
17496750 |
gagaaaaaatataagaaaattggatctttactctttttctataggagaattctttgtta----ccctaacaaaattacctaaaaaatcaattttattaaa |
17496655 |
T |
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| Q |
119 |
aattagttaaatatgaaaatggaagtgaaaacatgggagtgatgaacatgcatcgaagaagtgttgannnnnnngttggcttgaagctaaattttggaat |
218 |
Q |
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| T |
17496654 |
aattagttaaatatgaaaatggaagtgaaaacatgggagtgatgaacatgcatcgaagaagtgttggtttttttgttggcttgaagctaaattttggaat |
17496555 |
T |
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| Q |
219 |
tttgtcatttaatttgcatgttaggtggataca |
251 |
Q |
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| T |
17496554 |
tttgtcatttaatttgcatgttaggttgataca |
17496522 |
T |
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