View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_41 (Length: 324)
Name: NF19267_high_41
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_41 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 290
Target Start/End: Complemental strand, 20770219 - 20769945
Alignment:
| Q |
15 |
cagagatgagcgttttccataacttacttacacacctcaatcgcatcagagatttcacgttaagccgtgatagtatttcggtaataagttcgttcgggag |
114 |
Q |
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| T |
20770219 |
cagagatgagcgttttccataacttacttacacacctcaatcgcatcagagatttcacgttaagccgtgatagtatttcggtaataagttcgtccgggag |
20770120 |
T |
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| Q |
115 |
aattaccggagattgacgatgttcatgagaatttgcgagatttgaactggagtacttcacacggggcagcttttggatgttcatgactatggcgtttgtt |
214 |
Q |
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| T |
20770119 |
aattactggggattgacgatgttcatgagaatttgcgagatttgaacaggagtacttcacacggggaagcttttggatgttcatgactatggcgtttgtt |
20770020 |
T |
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| Q |
215 |
attggagttgagattgataaccctaaatagtttaggcaattctatttataatttataatgtcacaattgattaaaa |
290 |
Q |
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| T |
20770019 |
attggagttgagagtgataaccctaaatag-ttacacaattgtatttataatttctaatgtcacaattgattaaaa |
20769945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 14075980 - 14075884
Alignment:
| Q |
27 |
ttttccataacttacttacacacctcaatcgcatcagagatttcacgttaagccgtgatagtatttcggtaataagttcgttcgggagaattaccgg |
123 |
Q |
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| T |
14075980 |
tttttcatgacttactcacacacttcattcgcatcagatatttcacgttaagtcgtgatagtatttccgtaataagttctttggggagaattaccgg |
14075884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 14386008 - 14385912
Alignment:
| Q |
27 |
ttttccataacttacttacacacctcaatcgcatcagagatttcacgttaagccgtgatagtatttcggtaataagttcgttcgggagaattaccgg |
123 |
Q |
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| T |
14386008 |
tttttcatgacttactcacacacttcattcgcatcagatatttcacgttaagtcgtgatagtatttccgtaataagttctttggggagaattaccgg |
14385912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 18965726 - 18965816
Alignment:
| Q |
15 |
cagagatgagcgttttccataacttacttacacacctcaatcgcatcagagatttcacgttaagccgtgatagtatttcggtaataagttc |
105 |
Q |
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||||||||| ||||||||| ||| || |||||| | | | |||||||||||||||| |||| |||||||||||||| |||||||||| |
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| T |
18965726 |
cagagatgatggttttccatgtcttgctcacacacttaagttgcatcagagatttcacactaagatgtgatagtatttcgataataagttc |
18965816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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