View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_52 (Length: 287)
Name: NF19267_high_52
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 46290437 - 46290713
Alignment:
| Q |
1 |
ttactcttgtgtgagaaatattaatcaaaatatttttcaagtttgtaatcccgaagtaatttggcctgaactatgttaggatcctagtagtttgtgataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46290437 |
ttactcttgtgtgagaaatattaatcaaaatatttttcaagtttgtaattccgaagtaatttggcctgaactatgttaggatcctggtagtttgtgataa |
46290536 |
T |
|
| Q |
101 |
aacataaaggcagnnnnnnnggacaaaagagtgaaagaaaatctgtattattgctagaattcagaaagctaaagtgaacgagcactttatgaagagaaca |
200 |
Q |
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||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290537 |
aacataaaggccgaaaaaaaggacaa--gagtgaaagaaaatctgtattattgctagaattcagaaagctaaagtgaacgagcactttatgaagagaaca |
46290634 |
T |
|
| Q |
201 |
ccctcaccatccatcccctttcctattgaatacctattgtcctactgcctcttgactgatcaatacacgcctctctgct |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290635 |
ccctcaccatccatcccctttcctattgaatacctattgtcctactgcctcttgactgatcaatacacgcctctctgct |
46290713 |
T |
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