View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_high_70 (Length: 237)
Name: NF19267_high_70
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_70 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 4066144 - 4065952
Alignment:
| Q |
21 |
gctcctgcagatgggttagattctggagttattctagaacaaacacttacagttgtacttcagcctaatgttcagagagccgatgttcagagagccggta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4066144 |
gctcctgcagatgggttagattctggagttattctagaacaaacacttacagttgtacttcagcctaatgttcagagagccg---------------gta |
4066060 |
T |
|
| Q |
121 |
tgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatggaagatgtgttcttgctaaatcgagtat |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4066059 |
tgagttatcatgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatggaagatgtgttcttgctaaatcgagtaa |
4065960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 4060973 - 4060779
Alignment:
| Q |
19 |
aagctcctgcagatgggttagattctggagttattctagaacaaacacttacagttgtacttcagcctaatgttcagagagccgatgttcagagagccgg |
118 |
Q |
| |
|
|||||| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |
|
|
| T |
4060973 |
aagctcttgcagatgggttagaatcaggaattattctagaacaaacacttacagttgtacttcagcc---------------cgatattcagagagctgg |
4060889 |
T |
|
| Q |
119 |
tatgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatggaagatgtgttcttgctaaatcgagt |
218 |
Q |
| |
|
| |||| | || ||||||||||||||||||||||||||||||| | |||||||||||||||| |||| | ||||| || |||||||||||||| |||||| |
|
|
| T |
4060888 |
tttgagctctcccgatgaaataaagattcaaccaagctggtctctgagctcaatatttggacgaaaaatcaatggtaggtgtgttcttgctaagtcgagt |
4060789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 21286057 - 21286234
Alignment:
| Q |
19 |
aagctcctgcagatgggttagattctggagttattctagaacaaacacttacagttgtacttcagcctaatgttcagagagccgatgttcagagagccgg |
118 |
Q |
| |
|
||||||||| |||| |||||||||| ||| | ||||||||||||||||||||| |||||||||||||| ||| |||||||||| || |
|
|
| T |
21286057 |
aagctcctgaagataggttagattcaggaatcattctagaacaaacacttacacttgtacttcagcct---------------gatattcagagagctgg |
21286141 |
T |
|
| Q |
119 |
tatgagttatcacgatgaaataaagattcaaccaagctggtctttaagctcaatatttggacaaaaagtgaatggaagatgtgttcttgctaa |
211 |
Q |
| |
|
|||||| | || ||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||| | ||||| | |||||||||||||| |
|
|
| T |
21286142 |
tatgagctctcccgatgaaataaagattcaacctagctgctctctgagctcaatatttggatgaaaaatcaatggtaagtgtgttcttgctaa |
21286234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University