View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_71 (Length: 237)
Name: NF19267_high_71
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_71 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37584389 - 37584163
Alignment:
| Q |
1 |
tatagataaagccctccatgaaagtactgttccaattataaatgacgcagatgacccggtagcaatcatgaactacaaaagaagatgaagaagaagaa-- |
98 |
Q |
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| T |
37584389 |
tatagataaagccctccatgaaagtactgttccaattataaatgaggcagatgacccggtagcaatcatgaactacaaaagaagatgaagaagaagaaga |
37584290 |
T |
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| Q |
99 |
----attaataagtcatcgctaccttattgcatattgatttggatacttatacataagttattaacttattatcatgatcatgaagtaacaatgtgtagc |
194 |
Q |
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| T |
37584289 |
agaaattaataagtcatcgctaccttattgcatattgatttggatacttatacataagttattaacttattatcatgatcatgaagtaacaatgtgtagc |
37584190 |
T |
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| Q |
195 |
aaaacatacctgatttaaggtagtcaa |
221 |
Q |
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| T |
37584189 |
aaaacatacctgatttaaggtagtcaa |
37584163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37590779 - 37591006
Alignment:
| Q |
1 |
tatagataaagccctccatgaaagtactgttccaattataaatgacgcagatgacccggtagcaatcatgaactacaaaagaagatgaagaagaagaaa- |
99 |
Q |
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| T |
37590779 |
tatagctaaagccctccatgaaagtactgttccaattatgaatgacccagatgccccactaacaatcatgaactacaaaagaagatgaagaagaagaaaa |
37590878 |
T |
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| Q |
100 |
-----ttaataagtcatcgctaccttattgcatattgatttggatacttatacataagttattaacttattatcatgatcatgaagtaacaatgtgtagc |
194 |
Q |
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| T |
37590879 |
acaaatttctatgtcatttctaccttattgcatattgatttagatacttatacataagttatcaacttattatcatggacatgaagttacaatgtgtagc |
37590978 |
T |
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| Q |
195 |
-aaaacatacctgatttaaggtagtcaa |
221 |
Q |
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| T |
37590979 |
aaaaacatacctgatttaaggtagtcaa |
37591006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 37463278 - 37463195
Alignment:
| Q |
1 |
tatagataaagccctccatgaaagtactgttccaattataaatgacgcagatgacccggtagcaatcatgaactacaaaagaag |
84 |
Q |
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| T |
37463278 |
tatagctaaagccctccatgaaagtactgttccaattatgaatgacacggatacagcagtaacaatcatgaactacaaaagaag |
37463195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 37463139 - 37463079
Alignment:
| Q |
161 |
ttattatcatgatcatgaagtaacaatgtgta-gcaaaacatacctgatttaaggtagtca |
220 |
Q |
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| T |
37463139 |
ttattatcgtgatcatgaagatacaatgtgtaagaaaaatatacctgatttaaggtagtca |
37463079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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