View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_72 (Length: 235)
Name: NF19267_high_72
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_72 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 2249772 - 2249625
Alignment:
| Q |
1 |
tgaatgctagaaaatcccaaccgtggagattctaaatgcggttgggacactatataaagtctatctcacactcattg------------acttcaactac |
88 |
Q |
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| T |
2249772 |
tgaatgctagaaaatcccaaccgtggagattctaaatgcggttgggacactatataaagtctatctcacactcattgtaatcctaaccaacttcaactac |
2249673 |
T |
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| Q |
89 |
atttaataatctccaacgaattccaacaacagacacaaaattgaatgc |
136 |
Q |
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| T |
2249672 |
atttaataatctccaacgaattccaacaacagacacaaaattgaatgc |
2249625 |
T |
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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 2249596 - 2249528
Alignment:
| Q |
154 |
ctctacctgaagagcaagaactccacaataagcaaagaaatattcaagccatttaggaagcttaaaact |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249596 |
ctctacctgaagagcaagaactccacaataagcaaagaaatattcaagccatttaggaagcttaaaact |
2249528 |
T |
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