View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_high_77 (Length: 220)
Name: NF19267_high_77
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_77 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 11542166 - 11542355
Alignment:
| Q |
16 |
aaaatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542166 |
aaaatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatc |
11542265 |
T |
|
| Q |
116 |
tcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542266 |
tcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattct |
11542355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 34614711 - 34614900
Alignment:
| Q |
16 |
aaaatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614711 |
aaaatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatc |
34614810 |
T |
|
| Q |
116 |
tcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614811 |
tcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattct |
34614900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 34757289 - 34757446
Alignment:
| Q |
48 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34757289 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
34757388 |
T |
|
| Q |
148 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34757389 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattct |
34757446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 34742222 - 34742339
Alignment:
| Q |
88 |
cattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctc |
187 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
34742222 |
cattttccatctttgaaatgatgaaatctcttgttgtccctcacaatgagtttcattcccacaatcttagacatgaatttgatagcattgtgacagtctc |
34742321 |
T |
|
| Q |
188 |
cacatatacgtagattct |
205 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34742322 |
cacatatacgtagattct |
34742339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 34757254 - 34757287
Alignment:
| Q |
23 |
aatctagcaatatatcatcagagtatctacattt |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34757254 |
aatctagcaatatatcatcagagtatctacattt |
34757287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 33778995 - 33779118
Alignment:
| Q |
68 |
accaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgatttt |
167 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||| || || ||||| || || ||||| || ||||| || |||||| | |||||||| || |
|
|
| T |
33778995 |
accagtaatccccacaagagcattttccatccttgaaatgatgaaaccttttgttatctctaacaatcagttccctccctacaatcctagacatgatctt |
33779094 |
T |
|
| Q |
168 |
gatagcattgtgacagtctccaca |
191 |
Q |
| |
|
||| |||||||||||||| ||||| |
|
|
| T |
33779095 |
gatggcattgtgacagtcaccaca |
33779118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 17993032 - 17992990
Alignment:
| Q |
65 |
actaccaataatctccacaagagcattttccatctttgaaatg |
107 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
17993032 |
actaccagtaatcaccacaagagcatttcccatctttgaaatg |
17992990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University