View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_9 (Length: 520)
Name: NF19267_high_9
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 271 - 503
Target Start/End: Complemental strand, 46290184 - 46289953
Alignment:
| Q |
271 |
gccaagtcacaatctatgacaaaagcactacactgctgtaagtaaaacaatatagaatagatggcatttgcttttaagcaacaaagagataatgaataaa |
370 |
Q |
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| T |
46290184 |
gccaagtcacaatctatgacaaaagcactacactgctgtaagtaaaacaatatagaatagatggcatttgcttttaagcaacaaagagataatgaataaa |
46290085 |
T |
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| Q |
371 |
caatgcatcagatgcaaaataataagtgttggaaacatggacatgtaatatcaaatttccgacacaacagtacatacattggggatgattgacaatagca |
470 |
Q |
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| T |
46290084 |
caatgcatcagatgcaaaataataagtgttggaaacatggacatgtaatatcaaatttccgacacaacagtacatacattggggatgattgacaatagca |
46289985 |
T |
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| Q |
471 |
acaaatttcatatacttacaaaagataacaatt |
503 |
Q |
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| T |
46289984 |
acaaatttcatatacttacaaaa-ataacaatt |
46289953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46290451 - 46290228
Alignment:
| Q |
1 |
ctcacacaagagtaagtctatatacatctattcttcttcnnnnnnntccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataaga |
100 |
Q |
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| T |
46290451 |
ctcacacaagagtaagtctatatacatctattcttc---aaaaaaatccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataaga |
46290355 |
T |
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| Q |
101 |
aaaatgtgcctacatgaaaaatttactaaactgaatcattaagaaaacatnnnnnnnntatcgacattaacagtgatgaacttacccgacggtcaaagaa |
200 |
Q |
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| T |
46290354 |
aaaatgtgcctacatgaaaaatttactaaactgaatcattaagaaaacataaaaaaaatatcgacattaacagtgatgaacttacccgacggtcaaagaa |
46290255 |
T |
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| Q |
201 |
cctaatggccctcggatcctgtaacac |
227 |
Q |
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| T |
46290254 |
cctaatggccctcggatcctgtaacac |
46290228 |
T |
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