View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19267_low_1 (Length: 700)

Name: NF19267_low_1
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19267_low_1
NF19267_low_1
[»] chr6 (27 HSPs)
chr6 (65-351)||(31564838-31565117)
chr6 (483-682)||(31565162-31565361)
chr6 (154-418)||(33414524-33414788)
chr6 (483-649)||(33414293-33414459)
chr6 (179-418)||(33269497-33269740)
chr6 (154-418)||(33395008-33395274)
chr6 (154-381)||(33258187-33258416)
chr6 (483-639)||(33383760-33383916)
chr6 (247-418)||(33383981-33384156)
chr6 (508-639)||(33351400-33351530)
chr6 (152-324)||(33278972-33279139)
chr6 (483-593)||(33292802-33292912)
chr6 (154-258)||(33293090-33293194)
chr6 (522-625)||(33258067-33258170)
chr6 (41-151)||(33385314-33385425)
chr6 (317-407)||(33292988-33293078)
chr6 (487-559)||(33269355-33269427)
chr6 (27-151)||(24632036-24632161)
chr6 (26-151)||(33259583-33259709)
chr6 (26-151)||(33416152-33416278)
chr6 (197-321)||(33280358-33280482)
chr6 (53-107)||(9165228-9165282)
chr6 (509-549)||(31567428-31567468)
chr6 (154-200)||(28873045-28873091)
chr6 (65-106)||(33282241-33282282)
chr6 (65-106)||(33398042-33398083)
chr6 (65-106)||(33408952-33408993)
[»] chr2 (3 HSPs)
chr2 (154-375)||(17447760-17447982)
chr2 (483-649)||(17445747-17445910)
chr2 (346-418)||(17445607-17445679)
[»] scaffold0428 (6 HSPs)
scaffold0428 (154-381)||(2308-2537)
scaffold0428 (152-324)||(15114-15281)
scaffold0428 (522-625)||(2188-2291)
scaffold0428 (197-321)||(13771-13895)
scaffold0428 (65-151)||(3704-3791)
scaffold0428 (65-106)||(11970-12011)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 65 - 351
Target Start/End: Original strand, 31564838 - 31565117
Alignment:
Q  65 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 164  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  165 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcat 31565030  T
Q  265 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565031 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 483 - 682
Target Start/End: Original strand, 31565162 - 31565361
Alignment:
Q  483 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565162 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 31565261  T
Q  583 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 682  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565262 aagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 31565361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 154 - 418
Target Start/End: Complemental strand, 33414788 - 33414524
Alignment:
Q  154 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 253  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcac 33414689  T
Q  254 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaag 353  Q
    ||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33414688 gatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaag 33414589  T
Q  354 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||    
T  33414588 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaag 33414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 483 - 649
Target Start/End: Complemental strand, 33414459 - 33414293
Alignment:
Q  483 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 582  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  33414459 ttgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagccttttattaaggatgacagtgttgtagtgaaagacttggtgaggca 33414360  T
Q  583 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 649  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||| |||||||||    
T  33414359 aagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttcactctcggagaaaca 33414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 179 - 418
Target Start/End: Complemental strand, 33269740 - 33269497
Alignment:
Q  179 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 274  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  275 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 374  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T
Q  375 agtttgtatctattgaagatattcctaaaaccactgtgacgaag 418  Q
    |||||||||||||||||||||||||  |||| | ||||||||||    
T  33269540 agtttgtatctattgaagatattcccgaaactattgtgacgaag 33269497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 154 - 418
Target Start/End: Complemental strand, 33395274 - 33395008
Alignment:
Q  154 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 253  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgac 33395175  T
Q  254 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 351  Q
    ||| ||| |||   |||||| ||||||||||| |||||||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| |||||||    
T  33395174 gatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgca 33395075  T
Q  352 agttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 418  Q
    |   ||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |||||||    
T  33395074 ataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaaccattgcgacgaag 33395008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 154 - 381
Target Start/End: Complemental strand, 33258416 - 33258187
Alignment:
Q  154 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 252  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  253 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 352  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  353 gttgctgctt-gtccacaggttcagtttgt 381  Q
    || |||  || |||||||||||||||||||    
T  33258216 gtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 483 - 639
Target Start/End: Complemental strand, 33383916 - 33383760
Alignment:
Q  483 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 582  Q
    ||||||||||||||||||||||||| |||  ||| || |||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  33383916 ttgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctttcattaaggatgacagtgtttcagtgaaagacttggtgaggca 33383817  T
Q  583 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactct 639  Q
    |||||||||||||||||||||||||||||  |   ||||||||||||||||||||||    
T  33383816 aagtatagctgccattggcgagaacattaaagctgggcgttttgttcggttcactct 33383760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 33384156 - 33383981
Alignment:
Q  247 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 346  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  347 atgcaagttgc----tgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 418  Q
    |||||||| ||    |||||||||| ||||||||||||||||| |||||||||||| | |||||| ||||||||||    
T  33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaag 33383981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 508 - 639
Target Start/End: Complemental strand, 33351530 - 33351400
Alignment:
Q  508 attaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaac 607  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  33351530 attaggagagcttgctcttctagggcatccttt-attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaac 33351432  T
Q  608 attactgtgcggcgttttgttcggttcactct 639  Q
    ||||  | ||||||||||||||||||||||||    
T  33351431 attaaagcgcggcgttttgttcggttcactct 33351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 152 - 324
Target Start/End: Complemental strand, 33279139 - 33278972
Alignment:
Q  152 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 251  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 33279045  T
Q  252 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 324  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279044 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 483 - 593
Target Start/End: Complemental strand, 33292912 - 33292802
Alignment:
Q  483 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 582  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||   | |||||||||| ||||||    
T  33292912 ttgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctttcattaaggatgacagtgtttctttgaaagacttggagaggca 33292813  T
Q  583 aagtatagctg 593  Q
    |||||||||||    
T  33292812 aagtatagctg 33292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 33293194 - 33293090
Alignment:
Q  154 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 253  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | |||||||||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcac 33293095  T
Q  254 gattc 258  Q
    |||||    
T  33293094 gattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 522 - 625
Target Start/End: Complemental strand, 33258170 - 33258067
Alignment:
Q  522 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 621  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  33258170 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 33258071  T
Q  622 tttt 625  Q
    ||||    
T  33258070 tttt 33258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 33385425 - 33385314
Alignment:
Q  41 tcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatat 139  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||  |||||||||| ||| | | ||||||| ||||||||||||||||    
T  33385425 tcttaggtttccagcctgttcacctatctttgaattcttacataagatttctaatcgttaaatgtctgttccgccgccctttggattgcagcaactatat 33385326  T
Q  140 caccaacacttg 151  Q
    ||||| ||||||    
T  33385325 caccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 317 - 407
Target Start/End: Complemental strand, 33293078 - 33292988
Alignment:
Q  317 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 407  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  |||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaacca 33292988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 487 - 559
Target Start/End: Complemental strand, 33269427 - 33269355
Alignment:
Q  487 tgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgtt 559  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  33269427 tgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagccttttattaaggatgacagtgtt 33269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 24632036 - 24632161
Alignment:
Q  27 ttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaat 125  Q
    |||||||||| | |||||||||||| | | |||||||| |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| ||    
T  24632036 ttatccaaacgaggtcttagttttccaacttgttcaccaatctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggat 24632135  T
Q  126 tgcagcaactatatcaccaacacttg 151  Q
    |||||||||| |||||||| ||||||    
T  24632136 tgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 33259709 - 33259583
Alignment:
Q  26 tttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaa 124  Q
    ||||||||||| | ||||||| |||| |||||  | || |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| |    
T  33259709 tttatccaaacaaggtcttaggtttccagccttcttacatatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttgga 33259610  T
Q  125 ttgcagcaactatatcaccaacacttg 151  Q
    |||||||||||||||||||| ||||||    
T  33259609 ttgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 33416278 - 33416152
Alignment:
Q  26 tttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaa 124  Q
    ||||||||||| | ||| | ||||||||| ||||||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| |    
T  33416278 tttatccaaacaaggtcatggttttctagtctgttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttgga 33416179  T
Q  125 ttgcagcaactatatcaccaacacttg 151  Q
    |||||||||||||||||||| ||||||    
T  33416178 ttgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 197 - 321
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  197 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 296  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  297 actttatcggtagaagtgagaaatt 321  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 9165282 - 9165228
Alignment:
Q  53 agcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 107  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165282 agcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 549
Target Start/End: Original strand, 31567428 - 31567468
Alignment:
Q  509 ttaggagagcttgctcttctagagcagcctttcattaagga 549  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31567428 ttaggagagctttctcttctagagcagcctttcattaagga 31567468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  154 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 200  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  65 tatctttgaattcttacataaggtttgtaatttttaaatgtc 106  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  65 tatctttgaattcttacataaggtttgtaatttttaaatgtc 106  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  65 tatctttgaattcttacataaggtttgtaatttttaaatgtc 106  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 154 - 375
Target Start/End: Original strand, 17447760 - 17447982
Alignment:
Q  154 tgaaaaggcgcaagcatacctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattca 252  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 17447859  T
Q  253 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 352  Q
    |||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  17447860 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaa 17447959  T
Q  353 gttgctgcttgtccacaggttca 375  Q
    || ||||||| ||||||||||||    
T  17447960 gtggctgcttttccacaggttca 17447982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 483 - 649
Target Start/End: Original strand, 17445747 - 17445910
Alignment:
Q  483 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 582  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||    
T  17445747 ttgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcgtttcagtgaaatatttggtgaggca 17445846  T
Q  583 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 649  Q
    |||||||||||| ||||| |||    |||  ||||||||||||||| |||||||||  |||||||||    
T  17445847 aagtatagctgctattggagag---tttaaagtgcggcgttttgttaggttcactcccggagaaaca 17445910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 346 - 418
Target Start/End: Original strand, 17445607 - 17445679
Alignment:
Q  346 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 418  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||    
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaag 17445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 102; Significance: 3e-50; HSPs: 6)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 154 - 381
Target Start/End: Complemental strand, 2537 - 2308
Alignment:
Q  154 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 252  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  253 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 352  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  353 gttgctgctt-gtccacaggttcagtttgt 381  Q
    || |||  || |||||||||||||||||||    
T  2337 gtagctttttggtccacaggttcagtttgt 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 152 - 324
Target Start/End: Original strand, 15114 - 15281
Alignment:
Q  152 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 251  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  15114 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 15208  T
Q  252 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 324  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15209 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 522 - 625
Target Start/End: Complemental strand, 2291 - 2188
Alignment:
Q  522 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 621  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  2291 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 2192  T
Q  622 tttt 625  Q
    ||||    
T  2191 tttt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 197 - 321
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  197 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 296  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  297 actttatcggtagaagtgagaaatt 321  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  65 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 151  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  65 tatctttgaattcttacataaggtttgtaatttttaaatgtc 106  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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