View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_low_10 (Length: 485)
Name: NF19267_low_10
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 38588657 - 38589114
Alignment:
| Q |
18 |
ataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgttatcgcgaaccaaattagccgatgattcgaggctgtcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38588657 |
ataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgttatcgcgaaccaaattagccgatgattcgaggctgtcaa |
38588756 |
T |
|
| Q |
118 |
gagcaaattgcattaagtctttgcaatcatcaagggccattttgacaccaggtttgtccttgccatgttcaaccgttaacttatcactcatattcaacgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38588757 |
gagcaaattgcattaagtctttgcaatcatcaagggccattttgacaccaggtttgtccttgccatgttcaaccgttaacttatcactcatattcaacgc |
38588856 |
T |
|
| Q |
218 |
aaggataacactttgggcacttgcctgaactgcagctgctaaataagctgttgggtcagaggaattagcaggtttcacggagccaagagtgtcatgacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38588857 |
aaggataacactttgggcacttgcctgaactgcagctgctaaataagctgttgggtcagaggaattagcaggtttcacggagccaagagtgtcatgacaa |
38588956 |
T |
|
| Q |
318 |
agtttttgatcttcagttgtttgacacatggtttgtacattcttttcgtgtgctgctaatgcaggatcatcctttttgttaacaacgacgacaacaccga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38588957 |
agtttttgatcttcagttgtttgacacatggtttgtacattcttttcgtgtgctgctaatgcaggatcatcctttttgttaacaacgacgacaacaccga |
38589056 |
T |
|
| Q |
418 |
tggcaacacccaccacaagaatgatggatacaccagagactaatatttttccgttcat |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38589057 |
tggcaacacccaccacaagaatgatggatacaccagagactaatatttttccgttcat |
38589114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 468
Target Start/End: Original strand, 38584060 - 38584120
Alignment:
| Q |
408 |
acaacaccgatggcaacacccaccacaagaatgatggatacaccagagactaatatttttc |
468 |
Q |
| |
|
|||||||| | ||||||||| || |||||||||| || ||||||||||| |||||||||| |
|
|
| T |
38584060 |
acaacacctaaggcaacacctacaacaagaatgagagaaacaccagagacaaatatttttc |
38584120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University