View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_11 (Length: 480)
Name: NF19267_low_11
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 146 - 411
Target Start/End: Original strand, 8445876 - 8446141
Alignment:
| Q |
146 |
ggccttctaattattattatccaagttaagtgattttgttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaactccactagtgt |
245 |
Q |
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| T |
8445876 |
ggccttctaattattattatccaagttaagtgattt-gttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaactccactagtgt |
8445974 |
T |
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| Q |
246 |
atgctatggtcccaagtttgaataaggcatgggcaggggcgatgtcgcttttgggagacagagtattcc-aatccacaatagaaacaagatcaaagggag |
344 |
Q |
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| T |
8445975 |
atgctatggtcccaagtttgaataaagcatgggcaggggtgatgtcgcttttgggagacagagtattccaaatccacaatagaaacaagatcaaagggag |
8446074 |
T |
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| Q |
345 |
acggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag |
411 |
Q |
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| T |
8446075 |
acggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag |
8446141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 8446166 - 8446267
Alignment:
| Q |
369 |
ttacaaagggaaagagttagggacaaagattagaacaatagagcata-----------ccctgtaatttacaaaaattagatactttagtctcttatgtt |
457 |
Q |
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| T |
8446166 |
ttacaaagggaaagagttagggacaa-gattagaacaatagagaatagaggtgaagatccctgtaatttacaaaaattagatactttagtctcttatgtt |
8446264 |
T |
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| Q |
458 |
cgt |
460 |
Q |
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| T |
8446265 |
cgt |
8446267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8445831 - 8445874
Alignment:
| Q |
1 |
tccctataatatttggcgctctaagcctactaaagcacacacaa |
44 |
Q |
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| T |
8445831 |
tccctataatatttggcgctctaagcctaccaaagcacacacaa |
8445874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 43061967 - 43062010
Alignment:
| Q |
119 |
tttagattttggtattgttttgtgtttggccttctaattattat |
162 |
Q |
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| T |
43061967 |
tttagattttggtattgttttgtggttggtcttctaattattat |
43062010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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