View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_12 (Length: 480)
Name: NF19267_low_12
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 42091080 - 42090703
Alignment:
| Q |
17 |
atgtttaaggtgaaatctaaaatgaggtttttaagttattttttgtttgtgcaaaatttatggtgtacatgtatgaatgttgaatattaaatccaaaatt |
116 |
Q |
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| T |
42091080 |
atgtttaaggtgaaatctaaaatgaggtttttaagttattattagtttgtgcaaaatttatggtgtacatgtatgaatgttgaatattaaatccaaaatt |
42090981 |
T |
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| Q |
117 |
tcaattcataaatcagggttcatgcctagatttggaaactttccaatcgcagtcatctgctccaaaagattgggctcattgttgtccacgttgccttttg |
216 |
Q |
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| T |
42090980 |
tcaattgataaatcagggttcatgcctagatttggaaactttccaatcgcagtcatctgctccaaaaggttgggctgattgttgtccacgttgccttttg |
42090881 |
T |
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| Q |
217 |
tctccaaccatggaaaatggatagctctaaactcaaataatgtaaggtaaccacgtactttctctaaactcaatcataagtaatgctannnnnnnnnnnn |
316 |
Q |
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| T |
42090880 |
tctccaaccatggaaaatggatagctctaaactcaaataatgtaaggtaaccacgtacttcctctaaactcaataataagtaatgcta------tttttt |
42090787 |
T |
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| Q |
317 |
nnnnnagaaattataagcaaacataactaatttcaatttcatacagattaataaaatcatgtaaccttatttagtttgaatgat |
400 |
Q |
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| T |
42090786 |
tatttagaaattataagcaaacataactaatttcaatttcttacagattaataaaatcatgtaaccttatttagtttgaatgat |
42090703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 42090671 - 42090613
Alignment:
| Q |
418 |
gttaatgatattatcctgctttttattcaattttgtatatgattttgtttcatctcact |
476 |
Q |
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| T |
42090671 |
gttaatgatattatcctgctttttattcaattttgtatatgattttgtttcatatcact |
42090613 |
T |
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