View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_17 (Length: 444)
Name: NF19267_low_17
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 184 - 434
Target Start/End: Original strand, 38272289 - 38272542
Alignment:
| Q |
184 |
ccttccattctctctgcccagtgcattatccaaattgctgtgatctacttgccttcccatcagtagctttcttcatgcatcctgtggttttatacaaggt |
283 |
Q |
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| T |
38272289 |
ccttccattctctctgcccagtgcattatccaaattgctgtgatctacttgccttcccatcagtagctttcttcatgcatcctgtggttttatacaaggt |
38272388 |
T |
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| Q |
284 |
ttacagttgtaaccttctcgatgtataagtgattagtgcatctgcaaacttgttggaatcaatagtaatat---tgnnnnnnnnnnnnnngttaattatg |
380 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
38272389 |
ttacagttgtaaccttctcaatgtataagtgagtagtgcatctgcaaacttgttggaatcaatagtaatattagttttttttttttttttgttaattatg |
38272488 |
T |
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| Q |
381 |
tagtaatattagttggtcatataaaaatgtagagatttccttctccctcctttg |
434 |
Q |
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| T |
38272489 |
tagtaatattagttggtcatataaaaatgtagagatttccttctccctcctttg |
38272542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 38272179 - 38272289
Alignment:
| Q |
19 |
tttgaatacaattttcctgtttgaatcgggaaactaatgtttgtacaaacaagtttctgttataaaatcaagaactgcagcaggttggcattgatcgtag |
118 |
Q |
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| T |
38272179 |
tttgaatacaattttcctgtttgaatcgggaaactaatgtttgtacaaacaagtttctgttataaaatcaagaactgcagcaggttggcattgatcgtag |
38272278 |
T |
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| Q |
119 |
ttcattcaatc |
129 |
Q |
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| T |
38272279 |
ttcattcaatc |
38272289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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