View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_20 (Length: 414)
Name: NF19267_low_20
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 393
Target Start/End: Complemental strand, 38457891 - 38457488
Alignment:
| Q |
6 |
aatgtaagaatttggaaatctctcatacaaaatttcttattctacaaatacttatttgaaaaatttatccaaggttactctaaaacacataaaagaagta |
105 |
Q |
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| T |
38457891 |
aatgtaagaatttggaaatctctcatacaaaatttcttattctacaaatacttatttgaaaaatttatccaaggttactctaaaacacataaaagaagtc |
38457792 |
T |
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| Q |
106 |
aatgttgttaaataacagct-------------------ataagtaacactataccgctatatgcgaaatttggacaaaccactattgtcccacgatata |
186 |
Q |
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| T |
38457791 |
aatgttgttaaataacagctactacatgtttccacttagataagtaacactataccactatatgtgaaatttggacaaaccactattgtcccacgatata |
38457692 |
T |
|
| Q |
187 |
ctatttactacaaaattagttggctataaagaagnnnnnnnncaaggacgnnnnnnnntatgatatatttttggggacgaaaaaaattagtggcatgaga |
286 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
38457691 |
ctatttactacaaaattagttggctataaagaagttttttttcaaggacgaaaaaaaatgtgatatatttttggggacgaaaaaaattagtggcatgaga |
38457592 |
T |
|
| Q |
287 |
ttttaagggtaaaaatgnnnnnnnnnnnnnnnatttaaaaaatccatcccatcctcttttgtgaataaaaattgtatttaattaaaatatctcttctctc |
386 |
Q |
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| T |
38457591 |
ttttaagggtaaaaatg--tttttttttttttatttaaaaaatccctcccatcctc-tttgtgaataaaaattgtatttaatgaaaatatctcttctccc |
38457495 |
T |
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| Q |
387 |
atctcct |
393 |
Q |
| |
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||||||| |
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| T |
38457494 |
atctcct |
38457488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 38459598 - 38459554
Alignment:
| Q |
53 |
atacttatttgaaaaatttatccaaggttactctaaaacacataa |
97 |
Q |
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| T |
38459598 |
atacttatttgaaaaaattattttaggttactctaaaacacataa |
38459554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 45371159 - 45371111
Alignment:
| Q |
154 |
aatttggacaaaccactattgtcccacgatatactatttactacaaaat |
202 |
Q |
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| T |
45371159 |
aatttggacaaaccactattgttccgcaatatgctatttagtacaaaat |
45371111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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