View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_21 (Length: 413)
Name: NF19267_low_21
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 178 - 406
Target Start/End: Complemental strand, 29116041 - 29115813
Alignment:
| Q |
178 |
tataaaatttagatgagatcatttggttccaaatcctgttctattttaataaaccataacttgttactcaattttaattctacaaaaccatcc---atgt |
274 |
Q |
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| T |
29116041 |
tataaaacttagatgagatcatttggttccaaatcctgttctattttaataaaccataacttgttactcaattttaattctacaaaaccatcctgcatgt |
29115942 |
T |
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| Q |
275 |
gtatcatttctagtttaataaaccgtaacttaattatacacttggtttcacttcatgatgcctaaatctccagtttaaaattctctcacttttctcgtta |
374 |
Q |
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| T |
29115941 |
ttat-atttctagtttaataaaccgtaactt--tcatacacttggtttcacttcatgctgcctaaatctccagtttaaaattctctcacttttctcgtta |
29115845 |
T |
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| Q |
375 |
attatagaagcaattagaatcgcgttcatctc |
406 |
Q |
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| T |
29115844 |
attatagaagcaattagaatcgcgttcatctc |
29115813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 29116183 - 29116037
Alignment:
| Q |
1 |
ataataggggtgagtaagctatttgactaattcaaattttgatcatgcttagaagtgaggcgtgtgaaattgcaaccgaaacatttcctttcttttagga |
100 |
Q |
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| T |
29116183 |
ataataggggtgagtaagctatttgactaattcaaattttgatcatgcttag---tgaggcgtgtgaaattgcaaccgaaacatttcctttcttttagga |
29116087 |
T |
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| Q |
101 |
attatctgtcaagtagttaataaccttataatgccttgatcttcctataa |
150 |
Q |
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| T |
29116086 |
aatatctgtcaagtagttaataaccttataatgccttgatcttcctataa |
29116037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 13167588 - 13167675
Alignment:
| Q |
199 |
tttggttccaaatcctgttctattttaataaacca-taacttgttactcaattttaattctacaaaaccatccatgtgtatcatttct |
285 |
Q |
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||||||||| ||||| |||||||||||||||| | ||||||| ||||| ||| | ||||||||||| |||||| | |||||||||| |
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| T |
13167588 |
tttggttccccatcctattctattttaataaacgagtaacttgctactctattccagttctacaaaactatccatatctatcatttct |
13167675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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