View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19267_low_25 (Length: 392)

Name: NF19267_low_25
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19267_low_25
NF19267_low_25
[»] chr7 (7 HSPs)
chr7 (18-367)||(11329247-11329596)
chr7 (254-331)||(11754698-11754774)
chr7 (279-331)||(48078598-48078650)
chr7 (276-331)||(35851976-35852031)
chr7 (276-334)||(45773216-45773274)
chr7 (278-331)||(16780775-16780828)
chr7 (276-328)||(22600661-22600713)
[»] chr4 (4 HSPs)
chr4 (199-331)||(19689268-19689401)
chr4 (276-331)||(25844270-25844325)
chr4 (276-331)||(40423326-40423381)
chr4 (281-329)||(37397965-37398013)
[»] chr3 (4 HSPs)
chr3 (265-318)||(5344502-5344555)
chr3 (276-331)||(15513474-15513529)
chr3 (276-331)||(25258081-25258136)
chr3 (293-331)||(54905139-54905177)
[»] chr1 (2 HSPs)
chr1 (276-329)||(42826424-42826476)
chr1 (250-327)||(47646067-47646144)
[»] chr5 (3 HSPs)
chr5 (263-331)||(33911759-33911827)
chr5 (276-331)||(36289617-36289672)
chr5 (276-305)||(9962954-9962983)
[»] chr2 (1 HSPs)
chr2 (276-330)||(37172605-37172659)
[»] chr8 (3 HSPs)
chr8 (278-331)||(38924418-38924471)
chr8 (276-336)||(9030606-9030666)
chr8 (276-320)||(36203391-36203435)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 11329247 - 11329596
Alignment:
Q  18 caagcttgtctggagaaaaactaagattttcaaaactctcttcaagaatgtaataattattatatcgttgaattaaactgcagttcgatccttggtatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11329247 caagcttgtctggagaaaaactaagattttcaaaactctcttcaagaatgtaataattattatatcgttgaattaaactgcagttcaatccttggtatat 11329346  T
Q  118 catcgttctttttgtaatttatgacccatggttatattagtgtttacatgcctgagttatgcataatggttggattttactcttatgaaattgctcaaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  11329347 catcgttctttttgtaatttatgacccatggttatattagtgtttacatgcctgagttatccataatggttcgattttactcttataaaattgctcaaaa 11329446  T
Q  218 actacactagccgtagctaactgggctcagcctttccagcgacagttaactgtcattggacacttttaagattgattcaatcactttttgagtcggttta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  11329447 actacactagccgtagctaactgggctcagcctttccagcgacagttaactgtcattggacacttttaagattgattcgatcactttttaagtcggttta 11329546  T
Q  318 accaatcttaaaagcgtgcaactaactgccgctggaaaggccgagccaca 367  Q
    ||| |||||||||||||| ||||||||||||||||||||||| |||||||    
T  11329547 accgatcttaaaagcgtgtaactaactgccgctggaaaggcctagccaca 11329596  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 11754774 - 11754698
Alignment:
Q  254 cagcgacagttaactgtcattggacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||| |||||||||||  || ||||||||||||| | ||||||||||||||   |||||| |||||||||||||||    
T  11754774 cagcgatagttaactgtcgctg-acacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaag 11754698  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 48078598 - 48078650
Alignment:
Q  279 acttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||||||||  ||||||||||||||| |||||||| |||| ||||||||||    
T  48078598 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaag 48078650  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 35852031 - 35851976
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||||||||||| | |||||||||||| | |||||||| |||| ||||||||||    
T  35852031 gacacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaag 35851976  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 45773216 - 45773274
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaagcgt 334  Q
    ||||||||| |||| | ||||||||||||||  | ||||| ||||||||||||||||||    
T  45773216 gacactttttagatcggttcaatcactttttacgccggttcaaccaatcttaaaagcgt 45773274  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 16780828 - 16780775
Alignment:
Q  278 cacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||||||||| | |||||||||||||| ||||| || |||| ||||||||||    
T  16780828 cacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaag 16780775  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 22600661 - 22600713
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaa 328  Q
    |||| ||||||||| |||||||| ||||||| || ||||| ||||||||||||    
T  22600661 gacatttttaagatcgattcaattactttttaagccggttcaaccaatcttaa 22600713  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 199 - 331
Target Start/End: Complemental strand, 19689401 - 19689268
Alignment:
Q  199 cttatgaaattgctcaaaaactacactagccgtagctaactg-ggctcagcctttccagcgacagttaactgtcattggacacttttaagattgattcaa 297  Q
    ||||| |||||||||||||| ||||| ||  |||| ||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  19689401 cttataaaattgctcaaaaaatacaccagaggtagttaattgtggctcagcctttccatcgacagttaactgtcgttggacacttttaagattggttcaa 19689302  T
Q  298 tcactttttgagtcggtttaaccaatcttaaaag 331  Q
    ||||||||| ||| | |||||||||| |||||||    
T  19689301 tcactttttaagttgatttaaccaattttaaaag 19689268  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 25844325 - 25844270
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||||||||||||||||||||| |||||| || ||||| |||| ||||||||||    
T  25844325 gacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaag 25844270  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 40423381 - 40423326
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||| ||||||||| | |||||||||||||| |||||||| ||| |||||||||||    
T  40423381 gacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaag 40423326  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 37398013 - 37397965
Alignment:
Q  281 ttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaa 329  Q
    ||||||||| | |||||||||||||| |||| ||| |||||||||||||    
T  37398013 ttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaa 37397965  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 5344502 - 5344555
Alignment:
Q  265 aactgtcattggacacttttaagattgattcaatcactttttgagtcggtttaa 318  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||    
T  5344502 aactgtcattgcacacttttaagattgattcaatcattttttaagttggtttaa 5344555  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 15513474 - 15513529
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    ||||||||||||||||| ||||||||||||| ||||  ||||||| ||||||||||    
T  15513474 gacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaag 15513529  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 25258136 - 25258081
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    ||||||||||||||   |||||||||||||| |||||||| |||| ||||||||||    
T  25258136 gacacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaag 25258081  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 54905139 - 54905177
Alignment:
Q  293 ttcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  54905139 ttcaatcactttttaagtcggtttaaccgatcttaaaag 54905177  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 42826476 - 42826424
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaa 329  Q
    |||||||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  42826476 gacacttttaagatgg-ttcaatcactttttaagtcggtttaaccaatcttaaa 42826424  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 47646067 - 47646144
Alignment:
Q  250 tttccagcgacagttaactgtcattggacacttttaagattgattcaatcactttttgagtcggtttaaccaatctta 327  Q
    |||||| ||||| ||||||||| |||||||||||| ||| || |||||||||| ||| | ||||| ||||| ||||||    
T  47646067 tttccaccgacaattaactgtcgttggacacttttcagaatggttcaatcactctttaaatcggtataaccgatctta 47646144  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 33911759 - 33911827
Alignment:
Q  263 ttaactgtcattggacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||| || ||||||| ||||||||||  |||||||||||||| | ||| |||||| |||||||||||    
T  33911759 ttaactatcgttggacatttttaagattagttcaatcactttttaaatcgatttaactaatcttaaaag 33911827  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 36289617 - 36289672
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||||||||||| |||| ||||||||||| |||| ||||||  |||||||||||    
T  36289617 gacacttttaagatcgatttaatcactttttaagtcagtttaatgaatcttaaaag 36289672  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Complemental strand, 9962983 - 9962954
Alignment:
Q  276 gacacttttaagattgattcaatcactttt 305  Q
    ||||||||||||||||||||||||||||||    
T  9962983 gacacttttaagattgattcaatcactttt 9962954  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 37172659 - 37172605
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaa 330  Q
    ||||||||||| || | |||||||||||||| |||| ||| ||||||||||||||    
T  37172659 gacacttttaacatcggttcaatcactttttaagtcagttcaaccaatcttaaaa 37172605  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 38924418 - 38924471
Alignment:
Q  278 cacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 331  Q
    |||||||||||| | |||||||||||||| |||||||| |||  ||||||||||    
T  38924418 cacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaag 38924471  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 9030606 - 9030666
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaagcgtgc 336  Q
    |||||||||||||| |||||||||||||||| | |||||| ||   |||||||||| ||||    
T  9030606 gacacttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaagtgtgc 9030666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 36203435 - 36203391
Alignment:
Q  276 gacacttttaagattgattcaatcactttttgagtcggtttaacc 320  Q
    ||||||||||||||||| ||||||||||| | |||||||| ||||    
T  36203435 gacacttttaagattgactcaatcactttataagtcggttcaacc 36203391  T

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