View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_27 (Length: 387)
Name: NF19267_low_27
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 9212877 - 9213238
Alignment:
| Q |
18 |
cactcattaatcttgaactagggtaattaacattctcacatttaactctcaccatagcatcatttcctattatcttcgcatcaatctccaaagcattaac |
117 |
Q |
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| T |
9212877 |
cactcattaatcttgcaccagggtgattaacattctcactttgtactctcaccatagcatcatttcctataatcttcacatcaatctcaaacgcattaac |
9212976 |
T |
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| Q |
118 |
cttacaaggacatttttggtctaacacggttgaaattgttgttgcactgttattatcgacaatttctatcgttaccatgttcacctttttcgattccttt |
217 |
Q |
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|||||||| | ||||||||||| ||| |||||| |||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
9212977 |
attacaaggtcttttttggtctaccacagttgaagttgtcgttgcactgttattatcgacaatttccatcgtttccatcttcacctttttcgattccttt |
9213076 |
T |
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| Q |
218 |
tgttgcccaaattttaaatcttcaatctttgcttttaactcattgatgtaatccactgcatctgataacaaagaagctttatccatctttgaaatgtttg |
317 |
Q |
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|||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| |
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| T |
9213077 |
tgttgcactgattctaaatcttcaatctttgattttaactcattgatgtaatccactgcatctgataaaagagaagctttatccatctttgaaacatttg |
9213176 |
T |
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| Q |
318 |
gaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgct |
379 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
9213177 |
gaaccacagatcttaaagcgtaaaatctatggtttagtttctctctcctttgtctctctgct |
9213238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 9195162 - 9194792
Alignment:
| Q |
18 |
cactcattaatcttgaactagggtaattaacattctcacatttaactctcaccatagcatcatttcctattatcttcgcatcaatctccaaagcattaac |
117 |
Q |
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| T |
9195162 |
cactcattaatcttgcactagggtgattaacattcaaactttgaactctcaccatagcatcatgtcctatgatcttcacatcaatctctaaagcaataag |
9195063 |
T |
|
| Q |
118 |
ctt---------acaaggacatttttggtctaacacggttgaaattgttgttgcactgttattatcgacaatttctatcgttaccatgttcacctttttc |
208 |
Q |
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|| || ||| |||||||||| ||| ||||| |||| |||||||| |||||||||||||||| |||||| ||| || |||||||| |
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| T |
9195062 |
attcttactacaactaggtttgttttggtctaccacaattgaagttgtcgttgcactattattatcgacaattttcatcgttttcatcatcgcctttttc |
9194963 |
T |
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| Q |
209 |
gattccttttgttgcccaaattttaaatcttcaatctttgcttttaactcattgatgtaatccactgcatctgataacaaagaagctttatccatctttg |
308 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
9194962 |
gattccttttgttgccctaattttaaatcttcgatctttgcttttaactcattgatgtaatctactgcatcagataacaaagaagctttatccatctttg |
9194863 |
T |
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| Q |
309 |
aaatgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgct |
379 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9194862 |
aaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgct |
9194792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 9235275 - 9235316
Alignment:
| Q |
18 |
cactcattaatcttgaactagggtaattaacattctcacatt |
59 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9235275 |
cactcattaatcttgcactagggtaattaacattctcacatt |
9235316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 28081217 - 28081131
Alignment:
| Q |
293 |
gctttatccatctttgaaatgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgct |
379 |
Q |
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||||| |||||||| |||| ||||||||||||| | || |||||||||| | ||||| || || ||||| ||||||||||||||| |
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| T |
28081217 |
gctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttctttgtctctctgct |
28081131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 17371053 - 17370995
Alignment:
| Q |
214 |
cttttgttgcccaaattttaaatcttcaatctttgcttttaactcattgatgtaatcca |
272 |
Q |
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|||||||||| | |||| ||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
17371053 |
cttttgttgcactaattctaaattttcaatctttgctttcaactcattgatgtaatcca |
17370995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 24748802 - 24748745
Alignment:
| Q |
214 |
cttttgttgcccaaattttaaatcttcaatctttgcttttaactcattgatgtaatcc |
271 |
Q |
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|||||||||| | ||| ||||| ||||||||||||||| ||||||| |||||||||| |
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| T |
24748802 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcatagatgtaatcc |
24748745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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