View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_39 (Length: 335)
Name: NF19267_low_39
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_39 |
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| [»] scaffold0902 (1 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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| [»] scaffold1801 (1 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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Alignment Details
Target: scaffold0902 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 2775 - 2471
Alignment:
| Q |
11 |
cacagacataataaaaacataactgccgataatcactatcataagcagtctaatacaaataaatcctagttgaagcctctagctagttatagaagaaaaa |
110 |
Q |
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| T |
2775 |
cacacacataataaaaacataactgccgataatcactatcataagcagtctaatacaaataaatcctagttgaagcctctagctagttatagaagaaaaa |
2676 |
T |
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| Q |
111 |
taaaagtaactccatcaatgnnnnnnngattataatggacaaaagtaattgaagggaaaccataatcaaaaactgaacaaacacaaggaaaattattctt |
210 |
Q |
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| T |
2675 |
taaaagtaactccatcgatgttttttttattataatggacaaaagtaattgaagggaaaccataatcaaaaactgaacaaacacaaggaaaatcattctt |
2576 |
T |
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| Q |
211 |
agttttgtttggtagtgtactagtatactctccctcacagatccttagtccttttttaggaaaattaattattttaatggacgatttatcacctatttct |
310 |
Q |
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| T |
2575 |
agttttgtttggta-----ctagtatactctccctcacagatccttagtccttttttaggaaaattaattattttaatggacgatttatcacctatttct |
2481 |
T |
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| Q |
311 |
atatgtttgt |
320 |
Q |
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|||||||||| |
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| T |
2480 |
atatgtttgt |
2471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 14247888 - 14247819
Alignment:
| Q |
154 |
agtaattgaagggaaaccataatcaaaaactgaacaaacacaaggaaaattattcttagttttgtttggt |
223 |
Q |
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| T |
14247888 |
agtaattgaatggaaatcataatcaaaaaccgaataaacacatggaaaattatttttagttttgtttggt |
14247819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 14316491 - 14316401
Alignment:
| Q |
97 |
ttatagaagaaaaataaaagtaactccatcaatgnnnnnnngattataatggacaaa----agtaattgaagggaaaccataatcaaaaac |
183 |
Q |
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| T |
14316491 |
ttattgaagaagaaaaaaattaactccatcaatgttttttcgattatgatggacaaatgagagtaattgaatggaaaccataatcaaaaac |
14316401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 1853 - 1965
Alignment:
| Q |
180 |
aaactgaacaaacacaaggaaaattattcttagttttgtttggtagt-----------gtactagtatactctccctcacagatccttagtcctttttta |
268 |
Q |
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| T |
1853 |
aaactgaataaacacaaggaaaattatttttagttttgtttggtaatttctttcatcagatctagtacactctccctcacagatcct--gtcctttttta |
1950 |
T |
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| Q |
269 |
ggaaaattaattatt |
283 |
Q |
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| T |
1951 |
tgaaaattaattatt |
1965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 576 - 622
Alignment:
| Q |
17 |
cataataaaaacataactgccgataatcactatcataagcagtctaa |
63 |
Q |
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| T |
576 |
cataataaaaacataactgcccataattgctatcataagcagtctaa |
622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 1159 - 1209
Alignment:
| Q |
18 |
ataataaaaacataactgccgataatcactatcataagcagtctaatacaa |
68 |
Q |
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| T |
1159 |
ataataaaaacataactgcccgtaatcgctatcatatgcagtctaacacaa |
1209 |
T |
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