View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_low_4 (Length: 643)
Name: NF19267_low_4
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 24 - 629
Target Start/End: Complemental strand, 24899220 - 24898624
Alignment:
| Q |
24 |
gtgttgttttttgttactattgatgctaagaactcaacagcgccggccgattcgatacaccgtctattggtttcgctctcagaggcaattgttttgagct |
123 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
24899220 |
gtgttgttttgtgttactattgatgctaaaaactcgacagcgccagccgattcgatacaccgtctatttgtttcgctctcagaagcaattgttttgagct |
24899121 |
T |
|
| Q |
124 |
tttttagggtttgaataagcaaatgaggtgaatctgaagattcagaagcttctttgaggagtttttctacaagggtttttgttgttggaggttttggtgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| || |
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| T |
24899120 |
tttttagggtttgaataagcaaatgaggtgaatc---------agaagcttctttgaggagtttttctataaggatttttgttgttggaggttttggagt |
24899030 |
T |
|
| Q |
224 |
tggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatgatttgca |
323 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899029 |
tggaatcctttcaattccaaaagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatgatttgca |
24898930 |
T |
|
| Q |
324 |
tcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgaga |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24898929 |
tcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgaga |
24898830 |
T |
|
| Q |
424 |
cagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattgaagaagcagaaa |
523 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
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| T |
24898829 |
cagtaactggatcattcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaa |
24898730 |
T |
|
| Q |
524 |
aattatttggactttgaaatgttttagctttttggtggagagttgagaaaaagaatgaatgaatatgagagaagggtggtggtattgttgttatttatag |
623 |
Q |
| |
|
|||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24898729 |
aattgtttggacgttgaaatgcttttgctttttggtggagagttgagaaaaagaatgaatgaatatgagagaagggtggtggtattgttgttatttatag |
24898630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 24 - 633
Target Start/End: Original strand, 24890747 - 24891344
Alignment:
| Q |
24 |
gtgttgttttttgttactattgatgctaagaactcaacagcgccggccgattcgatacaccgtctattggtttcgctctcagaggcaattgttttgagct |
123 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
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|
| T |
24890747 |
gtgttgttttgtgttactattgatgctaaaaactcgacagcgcctgccgattcgatacaccgtctatttgtttcgctctcggatgcaattgttttgagct |
24890846 |
T |
|
| Q |
124 |
tttttagggtttgaataagcaaatgaggtgaatctgaagattcagaagcttctttgaggagtttttctacaagggtttttgttgttggaggttttggtgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
24890847 |
tttttagggtttgaataagcaaatgaggtgaatc---------agaagcttctttgaggagtttttctataaggttttttgttgttggaggttttggtgt |
24890937 |
T |
|
| Q |
224 |
tggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatgatttgca |
323 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24890938 |
tggaatcctttcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatgatttgca |
24891037 |
T |
|
| Q |
324 |
tcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgaga |
423 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24891038 |
tcatgtgtgagttgttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgaga |
24891137 |
T |
|
| Q |
424 |
cagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattgaagaagcagaaa |
523 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
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|
| T |
24891138 |
cagtaactggatctttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaa |
24891237 |
T |
|
| Q |
524 |
aattatttggactttgaaatgttttagctttttggtggagagttgagaaaaagaatgaatgaatatgagagaagggtggtggtattgttgttatttatag |
623 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
24891238 |
aattgtttggactttgaaatgttattgctttttggtggagagttgagaaaaagaatgaatgaatatgagagaagggtggtggta---ttgttatttatag |
24891334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 24 - 573
Target Start/End: Complemental strand, 24906679 - 24906139
Alignment:
| Q |
24 |
gtgttgttttttgttactattgatgctaagaactcaacagcgccggccgattcgatacaccgtctattggtttcgctctcagaggcaattgttttgagct |
123 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
24906679 |
gtgttgttttgtgttactattgatgctaaaaactcgacagcgccagccgattcgatacaccgtctatttgtttcgctctcagaggcaattgttttgagct |
24906580 |
T |
|
| Q |
124 |
tttttagggtttgaataagcaaatgaggtgaatctgaagattcagaagcttctttgaggagtttttctacaagggtttttgttgttggaggttttggtgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
24906579 |
tttttagggtttgaataagcaaatgaggtgaatc---------agaagcttctttgaggagtttttctataaggatttttgttgttggaggttttggtgt |
24906489 |
T |
|
| Q |
224 |
tggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatgatttgca |
323 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24906488 |
tggaatcctttcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatgatttgca |
24906389 |
T |
|
| Q |
324 |
tcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgaga |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24906388 |
tcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgaga |
24906289 |
T |
|
| Q |
424 |
cagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattgaagaagcagaaa |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
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|
| T |
24906288 |
cagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatcttgattcattgtgtatgattcaagtagctgaaa |
24906189 |
T |
|
| Q |
524 |
aattatttggactttgaaatgttttagctttttggtggagagttgagaaa |
573 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
24906188 |
aattgtttggactttgaaatgttattgctttttggtggagagttgagaaa |
24906139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 336 - 444
Target Start/End: Complemental strand, 43262623 - 43262515
Alignment:
| Q |
336 |
agttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgagacagtaactggat |
435 |
Q |
| |
|
||||||||||| ||||||||||| |||||| | ||||| ||||||||||| || |||||||| ||||||||||| ||||||||||| || || |||| |
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|
| T |
43262623 |
agttgttttgtaacaggacatgtcatgtttttcttcgaaaatagccatttttcaatactttctctatcgtaggttatacctgttgagactgttaccggat |
43262524 |
T |
|
| Q |
436 |
ccttcatga |
444 |
Q |
| |
|
||||||||| |
|
|
| T |
43262523 |
ccttcatga |
43262515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 338 - 470
Target Start/End: Original strand, 36744552 - 36744684
Alignment:
| Q |
338 |
ttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgagacagtaactggatcc |
437 |
Q |
| |
|
||||||||| |||||||| || ||||||| ||||||| | ||||||||| ||| ||||||||||||| || || ||||| || | || || ||||| |
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|
| T |
36744552 |
ttgttttgtaacaggacaagtattgttttggaatgaaaataaccatttttctatgttttctctgtcgtacgtaattcctgtggaaagtgtgacaggatct |
36744651 |
T |
|
| Q |
438 |
ttcatgagttgtagtgaaatagggcatagaaaa |
470 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||||| |
|
|
| T |
36744652 |
ttcataagttgtagggaaattgggcaaagaaaa |
36744684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 33089116 - 33089075
Alignment:
| Q |
380 |
ccatttttcgatgctttctctgtcgtaggttatgcctgttga |
421 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
33089116 |
ccatttttcgatgctgtctctgtcgtaggttatgccggttga |
33089075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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