View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_low_40 (Length: 335)
Name: NF19267_low_40
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_40 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 22554241 - 22554554
Alignment:
| Q |
9 |
gaaatgaagcatcaaaaactaatgatgattcttcatcttcatttttaccatggttttgtttttgtgattgagtcatagcttttgtacttgttatgcactc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22554241 |
gaaatgaagcatcaaaaactaatgatgattcttcatcttcatttttaccatggttttgttttggtgattgagtcatagcttttgtacttgttatgcactc |
22554340 |
T |
|
| Q |
109 |
tatagccattgcattaacaatgcaaaaatagagagagaggtttgagagaggataaaagaaaaactaaggctacttattgatgcaatgagagaaaaaactt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22554341 |
tatagccattgcattaacaatgcaaaaatatagagagaggtttgagagaggatgaaagaaaaacttaggctacttattgatgcaatgagagaaaaaactt |
22554440 |
T |
|
| Q |
209 |
gcattatatataggcaagagaggatttctattttctctccaacatgcaagtcaccaacatgtttgagccagtaattgaatcatacacat-aaagagcaca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22554441 |
gcattatatataggcaagagaggatttctattttctctccaacatgcaagtcaccaacatgtttgagccagtaattgaatcatacacataaaagagcaca |
22554540 |
T |
|
| Q |
308 |
aaagtgtaattctt |
321 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22554541 |
aaagtgtaattctt |
22554554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University