View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_low_44 (Length: 320)
Name: NF19267_low_44
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 54084153 - 54083849
Alignment:
| Q |
1 |
ttgaatttggatgggtaaaaacttgtggttgaaacgccttgaacttgctcattggcatgatttatggcatgtgccaatacaatgccgactcatacgatgg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54084153 |
ttgaatttggatggataaaaacttgtggttgaaacgccttgaacttgctcattggcatgatttatggcatgtgccaatacaatgccgactcatacgatgg |
54084054 |
T |
|
| Q |
101 |
ccactctacttagtggaggatgaaaggttgtttattgttgactatgtatggtatggtactacgaaacagttgtacaaacacagacacgacattaacactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54084053 |
ccactctacttagtggaggatgaaaggttgtttattgttgactatgtatggtatggtactacgaaacagttgtacaaacacagacacgacattaacactg |
54083954 |
T |
|
| Q |
201 |
attactgatatataaaaccacatatgttggttttagacattgatatgtgttgaacactaatcacgtctttaatcaggagtgtcggtgctacaaaggtatg |
300 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
54083953 |
attactgatatataaaaccacacgtgtcggttttagaaattgatatgtgttgaacattaatcacgtctttaattaaaagtgtcggtgctacaaaggtatg |
54083854 |
T |
|
| Q |
301 |
gtttg |
305 |
Q |
| |
|
||||| |
|
|
| T |
54083853 |
gtttg |
54083849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 54080782 - 54080652
Alignment:
| Q |
17 |
aaaaacttgtggttgaaacgccttgaacttgctcattggcatgatttatggcatgtgccaataca--atgccgactcatacgatggccactctacttagt |
114 |
Q |
| |
|
||||||||||||||||| | |||||||| ||| |||| |||||||||||| ||||| |||||||| ||| ||||||||| |||||||||| | |||| |
|
|
| T |
54080782 |
aaaaacttgtggttgaagccccttgaacatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagt |
54080683 |
T |
|
| Q |
115 |
ggaggatgaaaggttgtttattgttgactat |
145 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |
|
|
| T |
54080682 |
ggaggatgaaaggctgtttattattgactat |
54080652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 7894751 - 7894800
Alignment:
| Q |
247 |
gtgttgaacactaatcacgtctttaatcaggagtgtcggtgctacaaagg |
296 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
7894751 |
gtgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaagg |
7894800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University