View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19267_low_45 (Length: 319)

Name: NF19267_low_45
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19267_low_45
NF19267_low_45
[»] chr2 (1 HSPs)
chr2 (18-310)||(2664629-2664921)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 2664629 - 2664921
Alignment:
Q  18 agtccacgtggatcaacgctataactatattcacctgaagaaggattatcaatgttcttccaagaagttaaatgaatgttcaaaccagttttgaagttcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2664629 agtccacgtggatcaacgctataactatattcacctgaagaaggattatcaatgttcttccaagaagttaaatgaatgttcaaaccagttttgaagttcc 2664728  T
Q  118 taccaagtttcattcctggtaacaatgtattagaaggataatcgaaactttgccacaaaatttcttcagagttttcatcttcaaagttcttcaagacaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2664729 taccaagtttcattcctggtaacaatgtattagaaggataatcgaaactttgccacaaaatttcttctgagttttcatcttcaaagttcttcaagacaaa 2664828  T
Q  218 gtttccagtgtctagaagctgtgctaccggattttttgccggtccagatgaatttgaggcccatagaacacttcctccgtagttaagaataat 310  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2664829 gtttccagtgtctagaagctgtgctaccggagtttttgccggtccagatgaatttgaggcccatagaacacttcctccgtagttaagaataat 2664921  T

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