View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_47 (Length: 309)
Name: NF19267_low_47
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 29288410 - 29288571
Alignment:
| Q |
57 |
gtttacaaattagaactggatggccagagtggaaaacttgaacaaatgaacaaacttgagagtttggaagacaacattttatttgtcggaaaccgtggtg |
156 |
Q |
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| T |
29288410 |
gttttcaaattggaactggatgcccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcggaagtgttggtg |
29288509 |
T |
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| Q |
157 |
attcaatttctttgtcggcctcttctttctccaagatggaaaagaattcaatttattttgtt |
218 |
Q |
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| T |
29288510 |
attccatttctgtgccggcctctgctttctccaagttggaaaaggattcaatttatgttgtt |
29288571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 29282976 - 29283132
Alignment:
| Q |
62 |
caaattagaactggatggccagagtggaaaacttgaacaaatgaacaaacttgagagtttggaagacaacattttatttgtcggaaaccgtggtgattca |
161 |
Q |
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| T |
29282976 |
caaattggaactggatgcccagagtggaaaactagaacacatgaacaaacttgagagtttggaagacagcattttatttgtcggaagtgttggtgattca |
29283075 |
T |
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| Q |
162 |
atttctttgtcggcctcttctttctccaagatggaaaagaattcaatttattttgtt |
218 |
Q |
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| T |
29283076 |
atatctgtgccagcctctgctttctccaagttggaaaaggattcaatttattttgtt |
29283132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 28612270 - 28612118
Alignment:
| Q |
60 |
tacaaattagaactggatggccagagtggaaaacttgaacaaatgaacaaacttgagagtttggaagacaacattttatttgtcggaaaccgtggtgatt |
159 |
Q |
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| T |
28612270 |
tacaaattggaactggatgtccagagtggaaaacttgaacagatgaacaaacttgagagtttggaagacaacattttatttgtcggaa---ttggtgatt |
28612174 |
T |
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| Q |
160 |
caatttctttgtcggcctcttctttctccaagatggaaaagaattcaatttatttt |
215 |
Q |
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| T |
28612173 |
caatttctgtgccagcctcttgtcactccaagttagaaaaagattcgatttatttt |
28612118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 80 - 275
Target Start/End: Original strand, 29270609 - 29270801
Alignment:
| Q |
80 |
ccagagtggaaaacttgaacaaatgaacaaacttgagagtttggaagacaacattttatttgtcggaaaccgtggtgattcaatttctttgtcggcctct |
179 |
Q |
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| T |
29270609 |
ccagagcggaaaagttgaacaaataaaaaaacttgagagtttagagaacaacattttatttgtcggaatc---ggtgattcaatttctgtgtcagccgct |
29270705 |
T |
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| Q |
180 |
tctttctccaagatggaaaagaattcaatttattttgttgatgaaagtgataaagatggttttgagttacatatctataatgcgcaggatggaagt |
275 |
Q |
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| T |
29270706 |
tgtttctcaaagtttgaaaaggattcaatttattttatttatgatggcgacgaagatgatttagagttacagatctataatgcgaaggatggaagt |
29270801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 28623327 - 28623456
Alignment:
| Q |
86 |
tggaaaacttgaacaaatgaacaaacttgagagtttggaagacaacattttatttgtcggaaaccgtggtgattcaatttct---ttgtcggcctcttct |
182 |
Q |
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| T |
28623327 |
tggaaaacttgaacaaatgaacaaacttaagagtttggaagacaacattttttttgttggaatc---gggaattcaatttcttcgttgtcaacctcttgt |
28623423 |
T |
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| Q |
183 |
ttctccaagatggaaaagaattcaatttatttt |
215 |
Q |
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| T |
28623424 |
ttctccaagttggaaaatgattcgatttatttt |
28623456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 28615433 - 28615567
Alignment:
| Q |
57 |
gtttacaaattagaactggatggccagagtggaaaacttgaacaaatgaacaaacttgagagtttggaagacaacattttatttgtcggaaaccgtggtg |
156 |
Q |
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| T |
28615433 |
gtttacaaattgaaactggacaccaagagtggaaaacttgtacaaatgaacatgcttaagagtttgggagacaacattttatttatcagatattgtggta |
28615532 |
T |
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| Q |
157 |
attcaatttctttgtcggcctcttctttctccaag |
191 |
Q |
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| T |
28615533 |
attcattttctgtgtctgcctcttgtttctccaag |
28615567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 29275452 - 29275537
Alignment:
| Q |
62 |
caaattagaactggatggccagagtggaaaacttgaacaaatgaacaaacttgagagtttggaagacaacattttatttgtcggaa |
147 |
Q |
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| T |
29275452 |
caaattggaactggacgcccagagcgaaaaagttgaacaaatcaacaaacttgagagtttggaaagcaacattttatttgttggaa |
29275537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 28621967 - 28622025
Alignment:
| Q |
32 |
tgacaagtcctcgtataattttgatgtttacaaattagaactggatggccagagtggaa |
90 |
Q |
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| T |
28621967 |
tgacaagtcctcatataaaattgatgtttacaaattagaactggatgttcagagtggaa |
28622025 |
T |
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