View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_low_49 (Length: 300)
Name: NF19267_low_49
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_49 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 14467869 - 14467582
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
14467869 |
gtaccagaaagattattatgtgagagattcaatgtttctaagtgatttaactgtccaaacattgctggaatggttccgttcaaaaaattctcactaagat |
14467770 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
14467769 |
caagatcttcaagaacatttaattggccaaactcgacaggaatgtttccttcaaacatatttttgcttaaattcaagtgtaataacattgacaaacttcc |
14467670 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctccagggtatctagttttcgcaatgatgcaacttgtgctggaact |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
14467669 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctccaaggtatctagtttttgcaatgatgcaacttgtgcaggaact |
14467582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 14482051 - 14481823
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
14482051 |
gtaccagaaagattattatgtgagagattcaatgtttctaagtgatttaactgtccaaacattgctggaatggttccgttcaaaaaattctcactaagat |
14481952 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
14481951 |
caagatcttcaagaacatttaattggccaaactcgacaggaatgtttccttcaaacatatttttgcttaaattcaagtgtaataacattgacaaacttcc |
14481852 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14481851 |
aagttgttttgggattgaaccacttaaat |
14481823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 14522679 - 14522916
Alignment:
| Q |
10 |
agattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagatcaagatctt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| || | ||||| || |||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
14522679 |
agattattatgtgagagattcaatgtttctaagcgatttaactgtccaagcattgttggtatggttccattcaaaaaattcccgctaagatcaagatctt |
14522778 |
T |
|
| Q |
110 |
caataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttccaagttgttt |
209 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||||||||||||| |||||| ||| |||||||| ||||||||| | ||||| |||||||||| || |
|
|
| T |
14522779 |
caataacattcaattgaccaagttcaacaggaatgtttccttcaaacttattttggctcaaattcaactgcaataacctagacaaccttccaagtttttc |
14522878 |
T |
|
| Q |
210 |
tgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
14522879 |
agggataaaaccacttaaattatttgttgcaagatcca |
14522916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 14504048 - 14503770
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || | |||||| || ||||||| || || ||||| |||| |||||| | || |||| |
|
|
| T |
14504048 |
gtaccagacagattattatgtgagagattcaatgtttctaaatgatttaacactccaaacattgaaggtatcgttccattcataaaatttccactgagat |
14503949 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| ||| |||||||| || | ||||| ||||| ||||| |
|
|
| T |
14503948 |
caagatcttcaataacatttaatcggccaaactcaacgggaatgtttccttcaaacttattttggctcaaattcaaatgtattaactcagacaaccttcc |
14503849 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctccagggtatctagttttcgcaatgatgcaacttgt |
279 |
Q |
| |
|
|||| | | ||||| | ||||||||||||||||||| |||||||| |||| |||| | |||||||||||| |||| |
|
|
| T |
14503848 |
aagtcttctagggatgaagccacttaaattatttgttgcaagctccaaggtagttagtgcttgcaatgatgcaatttgt |
14503770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 15011066 - 15010820
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||| |||||||| || | |||||| || |||||||| |||| | ||||| | ||||||| |
|
|
| T |
15011066 |
gtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagat |
15010967 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||| || |||||| |||||| ||| ||||| || ||||||||| | ||||| | || |
|
|
| T |
15010966 |
caagattttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacatagacaacatacc |
15010867 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
||||| ||| ||||| | ||||| ||||||||| ||| |||||||| |
|
|
| T |
15010866 |
aagttttttagggatgaagccactcaaattatttattgcaagctcca |
15010820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 15002173 - 15001886
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||| |||||||| || | |||||| || |||||||| |||| | ||||| | ||||||| |
|
|
| T |
15002173 |
gtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagat |
15002074 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||| | |||||||||||| |||||||||||||||||||||||||| || |||||| |||||| ||| ||||| || ||||||||| | ||||| | || |
|
|
| T |
15002073 |
caaggttttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacatagacaacatacc |
15001974 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctccagggtatctagttttcgcaatgatgcaacttgtgctggaact |
288 |
Q |
| |
|
||||| || ||||| | ||||| ||||||||||||| |||||||| | | ||||| |||||||||||| |||| |||||||| |
|
|
| T |
15001973 |
aagtttttcagggatgaatccactcaaattatttgttgcaagctccaatgcagttagttgatgcaatgatgcaatttgtactggaact |
15001886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 15017181 - 15016935
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||| |||||||| || | |||||| || |||||||| |||| | ||||| | ||||||| |
|
|
| T |
15017181 |
gtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagat |
15017082 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||| || |||||| |||||| ||| ||||| || | ||||||| | ||||| | || |
|
|
| T |
15017081 |
caagattttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaacttcaataacctagacaacatacc |
15016982 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
||||| || ||||| | ||||| |||||||||| || |||||||| |
|
|
| T |
15016981 |
aagtttttcagggatgaagccactgaaattatttgctgcaagctcca |
15016935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 15025183 - 15024937
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||| | ||||| || |||||||| |||| ||||||| | ||||||| |
|
|
| T |
15025183 |
gtaccagagagattgttatgtgagagattcaatgtttctaagcgatttaactgcccaagcattgatggtatggttccattcataaaattcccactaagat |
15025084 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||| |||||||||| || |||||| |||||| ||| ||||| || ||||||||| | || || || || |
|
|
| T |
15025083 |
caagattttcaataacattcaattgggcaaactcagcaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacctagataacctacc |
15024984 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
|||| ||| ||||| | ||||| ||||||||||||| |||||||| |
|
|
| T |
15024983 |
aagtcttttagggatgaagccactcaaattatttgttgcaagctcca |
15024937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 15032524 - 15032278
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||| | ||||| || |||||||| |||| ||||||| | ||||||| |
|
|
| T |
15032524 |
gtaccagagagattgttatgtgagagattcaatgtttctaagcgatttaactgcccaagcattgatggtatggttccattcataaaattcccactaagat |
15032425 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||| |||||||||| || |||||| |||||| ||| ||||| || ||||||||| | || || || || |
|
|
| T |
15032424 |
caagattttcaataacattcaattgggcaaactcagcaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacctagataacctacc |
15032325 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
|||| ||| ||||| | ||||| ||||||||||||| |||||||| |
|
|
| T |
15032324 |
aagtcttttagggatgaagccactcaaattatttgttgcaagctcca |
15032278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 14532794 - 14533037
Alignment:
| Q |
4 |
ccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagatcaa |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||||| || | ||||| || |||||||| ||| || ||| || |||||||||| |
|
|
| T |
14532794 |
ccagaaagattattatgtgaaagattcaatgtttgtaagtgatttaactgtccaagcattgatggtatggttccactcataacattttcactaagatcaa |
14532893 |
T |
|
| Q |
104 |
gatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttccaag |
203 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||| ||| |||||||| || | ||||| ||||| |||||||| |
|
|
| T |
14532894 |
gatcttcaataacctttaattggtcaaactcaacaggaatgtttccttcgaacttattttggctcaaattcaaatgtattaactcagacaaccttccaag |
14532993 |
T |
|
| Q |
204 |
ttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
| | | ||||| | ||||||||||||||| || |||||||| |
|
|
| T |
14532994 |
tcttctagggatgaagccacttaaattatttttttcaagctcca |
14533037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 15037086 - 15036840
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||| |||||||| || | |||||| || |||||||| |||| | ||||| | ||||||| |
|
|
| T |
15037086 |
gtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagat |
15036987 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||| | |||||||||||| |||||||||||||||||||||||||| || |||| | |||| | ||| |||||||| ||||||||| | ||||| | || |
|
|
| T |
15036986 |
caaggttttcaataacattcaattggccaaactcaacaggaatgttcccctcaagcttattatggctcaaattcaactgcaataacctagacaacatacc |
15036887 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
||||| || |||| | |||||||| |||||||||| |||||||| |
|
|
| T |
15036886 |
aagtttttccaggatgaagccacttaagttatttgttgcaagctcca |
15036840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 15040801 - 15040579
Alignment:
| Q |
25 |
agattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagatcaagatcttcaataacatttaatt |
124 |
Q |
| |
|
|||||||||||||| ||| |||||||| || | ||||| || |||||||| |||||| ||||| | ||||||||||||| ||||||||| ||||| | |
|
|
| T |
15040801 |
agattcaatgtttctaagcgatttaactgtccaagcattgttggtatggttccattcaaagaattcccactaagatcaagattttcaataacttttaact |
15040702 |
T |
|
| Q |
125 |
ggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttccaagttgttttgggattgaaccact |
224 |
Q |
| |
|
| |||| |||| |||||||||||||||||||| |||||| ||| | ||| ||||| |||||| | || || ||||||||||||||||||| | ||||| |
|
|
| T |
15040701 |
gtccaatctcatcaggaatgtttccttcaaacttattttggctcatatttaagtgtaataacatagataatcttccaagttgttttgggacgaagccact |
15040602 |
T |
|
| Q |
225 |
taaattatttgttgaaagctcca |
247 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
15040601 |
taaattatttgttgccagctcca |
15040579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 6557 - 6311
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||| ||||||| || | ||||| || |||||||| ||||||| |||||||||||||| |
|
|
| T |
6557 |
gtaccagaaaaattattatgtgagagattcaatgtttctaagcgatttaactctccaagcattgttggtatggttccattcaaaacattctcgctaagat |
6458 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||| ||||||||| |||||||||| |||||| ||| |||||||||| |||||| || | || ||||| |
|
|
| T |
6457 |
caagattttcaataattttcaattgtccaaactcagcaggaatgtctccttcaaacttattttggctcaaattcaagtccaataaattaggtaatcttcc |
6358 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
|||||||| |||||| | ||||| ||||||||||||| |||||||| |
|
|
| T |
6357 |
aagttgttctgggatgaagccactgaaattatttgttgcaagctcca |
6311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 12842 - 12599
Alignment:
| Q |
4 |
ccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagatcaa |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | || |||||||| || | ||||| || |||||||||||||||||||| | ||||| |||| |
|
|
| T |
12842 |
ccagaaagattattatgtgaaagattcaatgtttgtatgtgatttaactgtccaagcattgatggtatggttccgttcaaaaaatttccactaaggtcaa |
12743 |
T |
|
| Q |
104 |
gatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttccaag |
203 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||| || | ||||| ||||| |||||||| |
|
|
| T |
12742 |
gatcttcaataacttctaattggccaaactcaatgggaatgtttccttcaaacctattttggctcaaattcaaatgtattaactcagacaaccttccaag |
12643 |
T |
|
| Q |
204 |
ttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
| | | ||||| | ||||||||||||||| || |||||||| |
|
|
| T |
12642 |
tcttctagggatgaagccacttaaattatttttttcaagctcca |
12599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7201 - 6955
Alignment:
| Q |
1 |
gtaccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||| ||||||| || | ||||| || |||||||| ||||||| |||||||||||||| |
|
|
| T |
7201 |
gtaccagaaaaattattatgtgagagattcaatgtttctaagcgatttaactctccaagcattgttggtatggttccattcaaaacattctcgctaagat |
7102 |
T |
|
| Q |
101 |
caagatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttcc |
200 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||| ||||||||| |||||||||| |||||| ||| |||||||||| |||||| || | || ||||| |
|
|
| T |
7101 |
caagattttcaataattttcaattgtccaaactcagcaggaatgtctccttcaaacttattttggctcaaattcaagtccaataaattaggtaatcttcc |
7002 |
T |
|
| Q |
201 |
aagttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
|||||||| |||||| | ||||| ||||||||||||| |||||||| |
|
|
| T |
7001 |
aagttgttctgggatgaagccactgaaattatttgttgcaagctcca |
6955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 13485 - 13242
Alignment:
| Q |
4 |
ccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagatcaa |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | || |||||||| || | ||||| || |||||||||||||||||||| | ||||| |||| |
|
|
| T |
13485 |
ccagaaagattattatgtgaaagattcaatgtttgtatgtgatttaactgtccaagcattgatggtatggttccgttcaaaaaatttccactaaggtcaa |
13386 |
T |
|
| Q |
104 |
gatcttcaataacatttaattggccaaactcaacaggaatgtttccttcaaacatatttttgcttaaattcaagtgcaataactttgacaaacttccaag |
203 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||| || | ||||| ||||| |||||||| |
|
|
| T |
13385 |
gatcttcaataacttctaattggccaaactcaatgggaatgtttccttcaaacctattttggctcaaattcaaatgtattaactcagacaaccttccaag |
13286 |
T |
|
| Q |
204 |
ttgttttgggattgaaccacttaaattatttgttgaaagctcca |
247 |
Q |
| |
|
| | | ||||| | ||||||||||||||| || |||||||| |
|
|
| T |
13285 |
tcttctagggatgaagccacttaaattatttttttcaagctcca |
13242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 14605962 - 14605912
Alignment:
| Q |
3 |
accagaaagattattatgtgagagattcaatgtttccaagtattttaactg |
53 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
14605962 |
accagaaagattattatgtgagatattcaatgtttccaagtatttcaactg |
14605912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 16025139 - 16025089
Alignment:
| Q |
3 |
accagaaagattattatgtgagagattcaatgtttccaagtattttaactg |
53 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
16025139 |
accagaaagattattatgtgagatattcaatgtttccaagtatttcaactg |
16025089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 16102943 - 16102894
Alignment:
| Q |
4 |
ccagaaagattattatgtgagagattcaatgtttccaagtattttaactg |
53 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
16102943 |
ccagaaagattattatgtgagatattcaatgtttccaagtatttcaactg |
16102894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 16172620 - 16172571
Alignment:
| Q |
4 |
ccagaaagattattatgtgagagattcaatgtttccaagtattttaactg |
53 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
16172620 |
ccagaaagattattatgtgagatattcaatgtttccaagtatttcaactg |
16172571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 17848594 - 17848447
Alignment:
| Q |
4 |
ccagaaagattattatgtgagagattcaatgtttccaagtattttaactgccccaacattgccggaatggttccgttcaaaaaattctcgctaagatcaa |
103 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| ||| |||||| | | || | | | ||| ||| || |||||||| | ||||||| | |||||||||| |
|
|
| T |
17848594 |
ccagaaaggttattatgtgatatattcaatgattctaagtatatcagttgagcaagcgttgacggtattgttccgttgagaaaattcccactaagatcaa |
17848495 |
T |
|
| Q |
104 |
gatcttcaataacatttaattggccaaactcaacaggaatgtttcctt |
151 |
Q |
| |
|
|| || || || || ||||||||||||||||||||||| ||||||| |
|
|
| T |
17848494 |
gactttgaaggactttaaattggccaaactcaacaggaatatttcctt |
17848447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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