View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_53 (Length: 286)
Name: NF19267_low_53
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 2812325 - 2812579
Alignment:
| Q |
16 |
attaagtgtcttacggttcctcgatttagctaaatcgatggaattcgccatggatgatgatgattggtcaacggatgagatcaaactatggaaatttacc |
115 |
Q |
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| T |
2812325 |
attaagtgtcttacggttcctcgatttagctaaatcgatggaattcgccatggatgatgatgattggtcaacggatgagatcaaactatggaaatttacc |
2812424 |
T |
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| Q |
116 |
atttcaatcacagaaccctaaaattggatcaaaacaatcgaattggattgacccagttcgattaaacctgaaaagattgaaaatttgaagtgatcaataa |
215 |
Q |
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| T |
2812425 |
atttcaatcacagaaccctaaaattggatcaaaacaatcgaattggattgacccagttcgattaaacctgaaaagattgaaaatttgaagtgatcaataa |
2812524 |
T |
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| Q |
216 |
gattcaatagaggaattgttgtggggtgttcttaatcaatcatcaatcaaagaaa |
270 |
Q |
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| T |
2812525 |
gattcaatagaggaattgttgtggggtgttcttaatcaatcatcaatcaaagaaa |
2812579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 2812613 - 2812692
Alignment:
| Q |
156 |
aattggattgacccagttcgattaaacctgaaaagattgaaaatttgaagtgatcaataagattcaatagaggaattgtt |
235 |
Q |
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| T |
2812613 |
aattggattgacccagttcaattaaacctgagaagattggaaattttgagtgatcaatgaaattggattgaggaattgtt |
2812692 |
T |
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