View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19267_low_55 (Length: 271)

Name: NF19267_low_55
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19267_low_55
NF19267_low_55
[»] chr5 (10 HSPs)
chr5 (8-252)||(7736845-7737089)
chr5 (22-120)||(12081896-12081994)
chr5 (22-141)||(5731919-5732039)
chr5 (30-82)||(21149730-21149782)
chr5 (22-141)||(42086315-42086435)
chr5 (11-98)||(24875322-24875409)
chr5 (18-89)||(41163512-41163582)
chr5 (33-141)||(9805003-9805112)
chr5 (22-79)||(23383645-23383702)
chr5 (22-82)||(7866569-7866629)
[»] chr4 (11 HSPs)
chr4 (14-139)||(295534-295659)
chr4 (28-141)||(4736595-4736708)
chr4 (41-114)||(14859302-14859375)
chr4 (30-141)||(14124016-14124128)
chr4 (22-82)||(53599052-53599112)
chr4 (22-82)||(5472907-5472967)
chr4 (22-139)||(21429293-21429411)
chr4 (22-142)||(29895779-29895900)
chr4 (22-82)||(1446818-1446878)
chr4 (22-82)||(20128301-20128361)
chr4 (22-141)||(38166019-38166139)
[»] chr6 (9 HSPs)
chr6 (18-82)||(12606417-12606481)
chr6 (22-141)||(3601075-3601195)
chr6 (22-82)||(21898639-21898699)
chr6 (18-89)||(10311521-10311592)
chr6 (29-82)||(13584509-13584562)
chr6 (32-77)||(34954683-34954728)
chr6 (22-141)||(19089489-19089609)
chr6 (29-82)||(32048449-32048502)
chr6 (22-141)||(6606096-6606216)
[»] chr7 (13 HSPs)
chr7 (14-82)||(23823931-23823999)
chr7 (22-131)||(42210272-42210381)
chr7 (22-98)||(1797450-1797526)
chr7 (22-131)||(17748392-17748501)
chr7 (22-78)||(16802113-16802169)
chr7 (30-82)||(29151938-29151990)
chr7 (22-82)||(43862031-43862091)
chr7 (22-82)||(4228813-4228870)
chr7 (21-82)||(365129-365190)
chr7 (17-82)||(46414660-46414725)
chr7 (22-141)||(10047875-10047995)
chr7 (32-120)||(22973967-22974055)
chr7 (22-141)||(48804673-48804793)
[»] chr2 (18 HSPs)
chr2 (13-131)||(11069856-11069974)
chr2 (22-82)||(37560160-37560220)
chr2 (22-82)||(38962750-38962810)
chr2 (24-78)||(14853430-14853484)
chr2 (13-82)||(6358210-6358279)
chr2 (22-82)||(7747261-7747321)
chr2 (34-82)||(10026675-10026723)
chr2 (22-82)||(41220622-41220682)
chr2 (22-82)||(42770710-42770770)
chr2 (22-89)||(19976859-19976926)
chr2 (32-82)||(18649085-18649135)
chr2 (22-120)||(39806906-39807004)
chr2 (22-131)||(331488-331597)
chr2 (13-141)||(25540403-25540532)
chr2 (29-82)||(39201567-39201620)
chr2 (22-82)||(10823047-10823107)
chr2 (22-82)||(16034924-16034984)
chr2 (22-82)||(41187836-41187896)
[»] chr3 (9 HSPs)
chr3 (22-131)||(29135900-29136009)
chr3 (14-78)||(41219572-41219635)
chr3 (22-89)||(3755557-3755624)
chr3 (32-120)||(928597-928685)
chr3 (22-82)||(51683014-51683074)
chr3 (14-131)||(10040536-10040652)
chr3 (33-82)||(35923683-35923732)
chr3 (22-82)||(6462399-6462459)
chr3 (14-82)||(49082803-49082871)
[»] chr8 (4 HSPs)
chr8 (22-82)||(6100463-6100523)
chr8 (25-82)||(18374004-18374061)
chr8 (43-75)||(68164-68196)
chr8 (22-82)||(10927597-10927657)
[»] chr1 (15 HSPs)
chr1 (22-89)||(45726486-45726553)
chr1 (20-82)||(44969651-44969712)
chr1 (32-82)||(45361942-45361992)
chr1 (22-82)||(5855510-5855570)
chr1 (22-82)||(16263533-16263593)
chr1 (28-104)||(31734283-31734358)
chr1 (22-89)||(12744576-12744643)
chr1 (22-89)||(12755566-12755633)
chr1 (13-82)||(13265917-13265986)
chr1 (13-82)||(34334355-34334424)
chr1 (59-131)||(2567301-2567373)
chr1 (58-141)||(8764015-8764099)
chr1 (34-82)||(33498899-33498947)
chr1 (14-82)||(41663916-41663984)
chr1 (14-82)||(49078094-49078162)
[»] scaffold0170 (1 HSPs)
scaffold0170 (24-120)||(9837-9933)
[»] scaffold0016 (1 HSPs)
scaffold0016 (22-79)||(8763-8820)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 7736845 - 7737089
Alignment:
Q  8 agattattctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagcc 107  Q
    |||| |||||||| ||||| |||||||||| |   ||||||||||||||| |||||||||||| |||||| ||| | ||||||||| || || |||||||    
T  7736845 agatcattctaaggacgtacccgaggaatatcgagttcgattctcaggacaaacaacgtttggtcagtgcacatatctctacttacaagtcagattagcc 7736944  T
Q  108 atccaccgttggttggttggaaac-ggtgcgaaaggnnnnnnnnnncaatttgaatcattggaagtatgggttttctaaccatttcaagtgggatattat 206  Q
     || ||||||||||| |||||||| ||||||||||            |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7736945 gtcgaccgttggttgattggaaaccggtgcgaaagaaaaaataaaaaaatt-gaatcattggaagtatgggttttctaaccatttcaagtgggatattat 7737043  T
Q  207 atttttatgatcaacacacttaccaatgcctcatccatacgggcat 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7737044 atttttatgatcaacacacttaccaatgcctcatccatacgggcat 7737089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 12081896 - 12081994
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggt 120  Q
    ||||||||| |||||||  | |||||||||||||  |||||||| ||||||||||||||||  |||||  ||||||| |||||| | |||||| |||||    
T  12081896 acgtatccggggaatactgggttcgattctcagggggaacaacgcttggccagtgcgcatgcatctacgcacgagccgaattagtcgtccacctttggt 12081994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 5732039 - 5731919
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||| ||| |||||||| | |||||||| ||||| |||||||| ||||||||||||||||  ||||| || |||||| ||||| | | |||| || ||     
T  5732039 acgtacccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgtatgagccagattagtcgttcacctttagtg 5731940  T
Q  122 ggttggaaa-cggtgcgaaag 141  Q
    ||| ||||| |||||||||||    
T  5731939 ggtcggaaaccggtgcgaaag 5731919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 21149730 - 21149782
Alignment:
Q  30 gaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||||||||| ||||||| |||||  |||||||||||| ||||||||||||    
T  21149730 gaggaataccaggttcgattttcagggggaacaacgtttgaccagtgcgcatg 21149782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 42086315 - 42086435
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||| |||||||||||| | |||||||| ||||  |||||||| ||| ||||||||||||  |||||  | |||||  ||||| | |||||| |||||     
T  42086315 acgtacccgaggaataccgggttcgattcccagggggaacaacgcttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtg 42086414  T
Q  122 ggttggaaa-cggtgcgaaag 141  Q
    ||| ||||| |||||||||||    
T  42086415 ggtcggaaaccggtgcgaaag 42086435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 24875322 - 24875409
Alignment:
Q  11 ttattctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagcc 98  Q
    |||||| ||| ||||| || | ||||| ||| ||||||||| |||  |||||||||||| ||||||||||||| |||||  |||||||    
T  24875322 ttattccaaggacgtacccaaagaatatcaggttcgattcttagggagaacaacgtttgaccagtgcgcatgtctctacgcacgagcc 24875409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 41163582 - 41163512
Alignment:
Q  18 aagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctac 89  Q
    ||||||||| ||| |||||||| | |||||||| ||||  |||||||||||||||||||| ||||| |||||    
T  41163582 aagaacgtacccggggaataccgggttcgattcccaggg-gaacaacgtttggccagtgcacatgtctctac 41163512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 9805003 - 9805112
Alignment:
Q  33 gaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggttggttggaaac- 131  Q
    ||||||| | |||||||| ||||  |||||||| ||||||||||||||||  |||||  | |||||  ||||| | |||||| ||||| ||| ||||||     
T  9805003 gaataccgggttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcggaaaca 9805102  T
Q  132 ggtgcgaaag 141  Q
    ||||||||||    
T  9805103 ggtgcgaaag 9805112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 23383645 - 23383702
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgc 79  Q
    ||||||| |||||||||| | |||||||| ||||  |||||||| |||||||||||||    
T  23383645 acgtatcagaggaataccgggttcgattcccagggggaacaacgcttggccagtgcgc 23383702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 7866569 - 7866629
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||| |||||||||||| | ||||||||  |||| |||||||| |||||||||| |||||    
T  7866569 acgtacccgaggaataccgggttcgattccgaggaggaacaacgcttggccagtgtgcatg 7866629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 295659 - 295534
Alignment:
Q  14 ttctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccac 113  Q
    ||||||| ||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||  |||||  |||| ||| ||||| | |||||    
T  295659 ttctaaggacgtatccggggaataccagattcgattcccag-aggaacaacgtttggccagtgcgcatgcctctacgcacgaaccagattagtcgtccac 295561  T
Q  114 cgttggttggttggaaa-cggtgcgaa 139  Q
    ||||||| |||| |||| |||||||||    
T  295560 cgttggtgggtttgaaaccggtgcgaa 295534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 4736595 - 4736708
Alignment:
Q  28 ccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggttggttgg 127  Q
    |||||||||||| | ||| ||||||||    ||||||||||||||| || |||||  ||||| ||| |||| |||||| |  ||||||||||| ||| ||    
T  4736595 ccgaggaataccgggttcaattctcagtggaaacaacgtttggccaatgtgcatgcctctacgtacaagccgaattagtcgcccaccgttggtgggtcgg 4736694  T
Q  128 aaacggtgcgaaag 141  Q
    ||||||||||||||    
T  4736695 aaacggtgcgaaag 4736708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 14859302 - 14859375
Alignment:
Q  41 gattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccacc 114  Q
    ||||||||| |||||| |||||| ||||| ||||||||||||| |||||  |||||||| ||||| ||||||||    
T  14859302 gattcgattttcaggaggaacaatgtttgaccagtgcgcatgtctctacgcacgagccagattagtcatccacc 14859375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 14124016 - 14124128
Alignment:
Q  30 gaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggttggttggaa 129  Q
    |||||||||||| |||||||| ||||  ||||||| |||||||||||||||||  |||||  |||||||  ||||| |   |||| ||||| ||||||||    
T  14124016 gaggaataccaggttcgattcccagggggaacaacatttggccagtgcgcatgcctctacacacgagccggattagtcgctcaccattggtgggttggaa 14124115  T
Q  130 a-cggtgcgaaag 141  Q
    | |||||||||||    
T  14124116 accggtgcgaaag 14124128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 53599052 - 53599112
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||| ||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||    
T  53599052 acgtacccggggaataccgggttcgattcccaggaggaacaacgtttggccagtgcgcatg 53599112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 5472967 - 5472907
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| |||||||||| || ||||||||||   ||||||| ||||||||||||||||    
T  5472967 acgtatccggggaataccaggtttgattctcaggggaaacaacgcttggccagtgcgcatg 5472907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 21429293 - 21429411
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    |||||||||||||||| | | ||||||| | |||  ||||||||||| |||||||||||||  |||||  ||||| || | ||| | |||||| |||||     
T  21429293 acgtatccgaggaatatcgggttcgatttttagggggaacaacgtttagccagtgcgcatgcctctacgcacgagtcagactagtcgtccacctttggtg 21429392  T
Q  122 ggttggaaa-cggtgcgaa 139  Q
    ||| ||||| |||||||||    
T  21429393 ggtcggaaaccggtgcgaa 21429411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 29895779 - 29895900
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||||||| |||||||| | |||||||| ||||  |||||||  ||||||||||||||||  |||||  | |||||  ||||| | |||||| |||||     
T  29895779 acgtatccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtg 29895878  T
Q  122 ggttggaaa-cggtgcgaaagg 142  Q
    | | ||||| ||||||||||||    
T  29895879 gttcggaaaccggtgcgaaagg 29895900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 1446818 - 1446878
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| |||||||| | |||||||| ||||  |||||||  ||||||||||||||||    
T  1446818 acgtatccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatg 1446878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 20128301 - 20128361
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| |||||||  | |||||||||||||  |||||| | ||||||||||||||||    
T  20128301 acgtatccggggaatactgggttcgattctcagggggaacaatgcttggccagtgcgcatg 20128361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 38166019 - 38166139
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||||||| |||||||  | || ||||| ||||  |||||||| ||||||||||||||||  |||||  |||||||  ||||| |  ||||| |||||     
T  38166019 acgtatccggggaatactgggttggattcccagggggaacaacgcttggccagtgcgcatggctctacgcacgagccggattagtcgcccacctttggtg 38166118  T
Q  122 ggttggaaa-cggtgcgaaag 141  Q
    ||| ||||| |||||||||||    
T  38166119 ggtcggaaaccggtgcgaaag 38166139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 12606417 - 12606481
Alignment:
Q  18 aagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||||||| ||||||||||||||||||  ||||  |||||||||||||||||||||||||    
T  12606417 aagaacgtatccggggaataccagattcgatttccagggggaacaacgtttggccagtgcgcatg 12606481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 3601075 - 3601195
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    |||||| || |||||||| | |||||||||||||  |||||||| ||||||||||||||||  | |||  |||||||  ||||| | |||||| |||||     
T  3601075 acgtattcggggaataccggtttcgattctcagggggaacaacgcttggccagtgcgcatgcctatacacacgagccggattagtcgtccacctttggtg 3601174  T
Q  122 ggttggaaa-cggtgcgaaag 141  Q
    ||| ||||| |||||||||||    
T  3601175 ggtcggaaaccggtgcgaaag 3601195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 21898639 - 21898699
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| |||||||| | |||||||| ||||| |||||||| ||||||||||||||||    
T  21898639 acgtatccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatg 21898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 10311592 - 10311521
Alignment:
Q  18 aagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctac 89  Q
    ||||||||||||| |||||||| | |||||| |||| |  |||||||| ||||||||||||||||| |||||    
T  10311592 aagaacgtatccggggaataccgggttcgatcctcaaggggaacaacgcttggccagtgcgcatgtctctac 10311521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 13584562 - 13584509
Alignment:
Q  29 cgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||||||| ||||||||  | || |||||||||||||||||||||||||    
T  13584562 cgaggaataccaggttcgattcctaagatgaacaacgtttggccagtgcgcatg 13584509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 34954728 - 34954683
Alignment:
Q  32 ggaataccagattcgattctcaggacgaacaacgtttggccagtgc 77  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||    
T  34954728 ggaataccaggttcgattctcagggggaacaacgtttggccagtgc 34954683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 19089489 - 19089609
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    |||||||||||||||||||| || ||||| ||||  |||||||  |||||||||| |||||  |||||  |||||||  ||||| | || ||| |||||     
T  19089489 acgtatccgaggaataccaggtttgattcccagggggaacaacacttggccagtgagcatgcctctacgcacgagccggattagtcgtctacctttggtg 19089588  T
Q  122 ggttggaaa-cggtgcgaaag 141  Q
    ||| ||||| |||||||||||    
T  19089589 ggtcggaaaccggtgcgaaag 19089609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 32048449 - 32048502
Alignment:
Q  29 cgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| ||||||||||| |||||  ||||||||||||| ||||| |||||    
T  32048449 cgaggaatatcagattcgattttcagggagaacaacgtttggtcagtgtgcatg 32048502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 6606216 - 6606096
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||||||| |||||||| | |||||||||||||  |||||||  ||||||||||  ||||  |||||  | |||||  ||||| | |||||| |||||     
T  6606216 acgtatccggggaataccgggttcgattctcagggggaacaacacttggccagtgtacatgcctctacgcatgagccggattagtcgtccaccattggtg 6606117  T
Q  122 ggttggaaa-cggtgcgaaag 141  Q
    ||| ||||| |||||||||||    
T  6606116 ggtcggaaaccggtgcgaaag 6606096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 23823931 - 23823999
Alignment:
Q  14 ttctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||| |||||||||||||||| |||||| |||||||| |   ||||||||||||||||||||||||    
T  23823931 ttctaaggacgtatccgaggaatatcagatttgattctcaagggaaacaacgtttggccagtgcgcatg 23823999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 42210381 - 42210272
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    |||||||||||||||||| | |||||||| |||    ||||||||||||||||||||||||  |||||  |||||||  ||||  || |||||||||||     
T  42210381 acgtatccgaggaataccggcttcgattcccagtgaaaacaacgtttggccagtgcgcatgcctctacgcacgagccggattaatcacccaccgttggtg 42210282  T
Q  122 ggttggaaac 131  Q
    ||| ||||||    
T  42210281 ggtcggaaac 42210272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 1797450 - 1797526
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagcc 98  Q
    |||||||||||||||||| | |||||||| ||||   ||||||| ||||||||||||||||| |||||  |||||||    
T  1797450 acgtatccgaggaataccgggttcgattcccaggggaaacaacgcttggccagtgcgcatgtctctacgcacgagcc 1797526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 17748501 - 17748392
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    |||||| || |||||||| | |||||||| ||||  |||||||| ||||||||||||||||  ||||| ||||||||  ||||| | |||||| ||| |     
T  17748501 acgtattcggggaataccgggttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgtacgagccggattagtcgtccacctttgttg 17748402  T
Q  122 ggttggaaac 131  Q
    ||| ||||||    
T  17748401 ggtcggaaac 17748392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 16802113 - 16802169
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcg 78  Q
    ||||| ||| |||||||| ||||||||||| |||| |||||||| ||||||||||||    
T  16802113 acgtacccggggaataccggattcgattcttaggaggaacaacgattggccagtgcg 16802169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 29151938 - 29151990
Alignment:
Q  30 gaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||||||| | |||||||| ||||| |||||||||||| ||||||||||||    
T  29151938 gaggaataccgggttcgattcccaggaagaacaacgtttgaccagtgcgcatg 29151990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 43862091 - 43862031
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||| | |||||||| | |||||||| ||||  |||||||||||||||||||||||||    
T  43862091 acgtatctggggaataccgggttcgattcccagggggaacaacgtttggccagtgcgcatg 43862031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 4228870 - 4228813
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||||||||||||||||| |||||||  |||   |||||||||||||||||||| ||||    
T  4228870 acgtatccgaggaataccaggttcgatttccag---gaacaacgtttggccagtgcacatg 4228813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 365129 - 365190
Alignment:
Q  21 aacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||||||||||||| | |||||||| ||||| |||||||| ||   |||||||||||    
T  365129 aacgtatccgaggaataccgggttcgattcacaggaggaacaacgcttaatcagtgcgcatg 365190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 46414660 - 46414725
Alignment:
Q  17 taagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||| ||||| ||| |||||||||  |||||||||||||| ||| |||| ||||||| ||||||||    
T  46414660 taaggacgtacccgtggaataccaagttcgattctcaggatgaataacgcttggccaatgcgcatg 46414725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 10047995 - 10047875
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||||||| |||||||| | |||||||| ||||  |||||||  |||||||||||||| |  |||||  | ||||  |||||| | |||||| |||||     
T  10047995 acgtatccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcaggcctctacgcatgagcagaattagtcgtccaccattggtg 10047896  T
Q  122 ggttggaaa-cggtgcgaaag 141  Q
    ||| ||||| |||||||||||    
T  10047895 ggtcggaaaccggtgcgaaag 10047875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 22973967 - 22974055
Alignment:
Q  32 ggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggt 120  Q
    |||||||| | |||||||||||||  |||||||| |||||||||| |||||  |||||  | |||||| ||||| | |||||| |||||    
T  22973967 ggaataccgggttcgattctcagggggaacaacgcttggccagtgtgcatgcgtctacgcatgagccagattagtcgtccacctttggt 22974055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 48804673 - 48804793
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||||||| |||||||| | |||||||| || |  |||||||  ||||||||||||||||  |||||  | |||||  ||||| | |||||| |||||     
T  48804673 acgtatccggggaataccgggttcgattcccaaggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtg 48804772  T
Q  122 ggttggaaa-cggtgcgaaag 141  Q
    ||| ||||| |||||||||||    
T  48804773 ggtcggaaaccggtgcgaaag 48804793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 11069856 - 11069974
Alignment:
Q  13 attctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatcca 112  Q
    |||| ||| ||||| ||| |||||||||| ||||||||  |||  ||||||||||||||||||||||||   |||||  ||||||  |||||| | ||||    
T  11069856 attccaaggacgtacccggggaataccaggttcgattccgagggggaacaacgtttggccagtgcgcatacctctacgcacgagctgaattagtcgtcca 11069955  T
Q  113 ccgttggttggttggaaac 131  Q
    |||||||| ||| ||||||    
T  11069956 ccgttggtgggtcggaaac 11069974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 37560160 - 37560220
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||| |||||||||||||| ||||||||||| |  ||||||||||||| |||||||||||    
T  37560160 acgtacccgaggaataccaggttcgattctcaaggggaacaacgtttggtcagtgcgcatg 37560220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 38962750 - 38962810
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| |||||||| | ||||||| |||||| |||||||| ||||||||||||||||    
T  38962750 acgtatccggggaataccgggttcgattttcaggaggaacaacgcttggccagtgcgcatg 38962810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 14853484 - 14853430
Alignment:
Q  24 gtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcg 78  Q
    ||||||| |||||||||||||||||| |||||  ||||||| |||||||||||||    
T  14853484 gtatccggggaataccagattcgattttcagggggaacaacttttggccagtgcg 14853430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 6358279 - 6358210
Alignment:
Q  13 attctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||| ||| ||||||||| ||||||||||||||||||  ||||  |||||||  ||||||||||||||||    
T  6358279 attcaaaggacgtatccggggaataccagattcgatttccagggggaacaacacttggccagtgcgcatg 6358210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 7747261 - 7747321
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| |||||||| | ||||||||  |||| ||||||||||||||||||| |||||    
T  7747261 acgtatccggggaataccgggttcgattcctaggaggaacaacgtttggccagtgtgcatg 7747321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 10026723 - 10026675
Alignment:
Q  34 aataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||| | |||||||||||||  |||||||||||||||||||||||||    
T  10026723 aataccgggttcgattctcagggggaacaacgtttggccagtgcgcatg 10026675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 41220622 - 41220682
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||| ||| |||||||| | |||||||| ||||| |||||||| ||||||||||||||||    
T  41220622 acgtacccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatg 41220682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 42770770 - 42770710
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||||| |||||| | ||| |||||||||  |||||||| ||||||||||||||||    
T  42770770 acgtatccgagaaataccgggttcaattctcagggggaacaacgcttggccagtgcgcatg 42770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 19976926 - 19976859
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctac 89  Q
    ||||||||| |||||||| | ||||||| |||||  ||| ||||||||| |||||||||||| |||||    
T  19976926 acgtatccggggaataccgggttcgattttcagggggaataacgtttggtcagtgcgcatgtctctac 19976859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 18649135 - 18649085
Alignment:
Q  32 ggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||||| |||||||||||||||| ||||||  ||||| |||||||||||    
T  18649135 ggaataccggattcgattctcaggaggaacaatatttgggcagtgcgcatg 18649085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 39807004 - 39806906
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggt 120  Q
    ||||| ||| |||||||| | |||||||| || ||  ||||||||||||||||||||||||  |||||  ||||| |  ||||| |||||||| |||||    
T  39807004 acgtacccggggaataccgggttcgattcccaagagaaacaacgtttggccagtgcgcatgcctctacacacgagtcggattagtcatccacctttggt 39806906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 331488 - 331597
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||| ||| |||||||| | |||||||| ||||  |||||||  |||||||||||||||| ||||||  | |||||  ||||| |  ||||| |||||     
T  331488 acgtacccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcttctacgcatgagccggattagtcgcccacctttggtg 331587  T
Q  122 ggttggaaac 131  Q
    ||||||||||    
T  331588 ggttggaaac 331597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 25540532 - 25540403
Alignment:
Q  13 attctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatcca 112  Q
    |||| ||| ||||||| | |||||||  | ||||||||  |||  |||||||| ||||||||||||||||  |||||  |||||||  ||||| | ||||    
T  25540532 attccaaggacgtatctggggaatactgggttcgattcctagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgtcca 25540433  T
Q  113 ccgttggttggttggaaa-cggtgcgaaag 141  Q
    || ||||| ||| ||||| |||||||||||    
T  25540432 cctttggtgggtcggaaaccggtgcgaaag 25540403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 39201620 - 39201567
Alignment:
Q  29 cgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||||||||  ||||||||||||||  |||||| |||||||||||| |||||    
T  39201620 cgaggaataccgaattcgattctcagggggaacaatgtttggccagtgtgcatg 39201567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 10823047 - 10823107
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||| ||| |||||||| | || ||||| ||||| |||||||| ||||||||||||||||    
T  10823047 acgtacccggggaataccgggtttgattcccaggaggaacaacgcttggccagtgcgcatg 10823107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 16034924 - 16034984
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||||||||||||||| | ||||||| |||||  |||||||| ||| |||||| |||||    
T  16034924 acgtatccgaggaataccgggttcgattttcaggcggaacaacgcttgaccagtgtgcatg 16034984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 41187836 - 41187896
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||||||||||||  |||| ||||| ||||  ||||||| ||| ||||||||||||    
T  41187836 acgtatccgaggaataccgaattcaattcttaggaaaaacaacgcttgaccagtgcgcatg 41187896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 29135900 - 29136009
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggtt 121  Q
    ||||||||| |||||||| |||||||||| ||||  |||||||  ||||||||||||||||  |||||  | |||||  ||||| | |||||| |||||     
T  29135900 acgtatccggggaataccggattcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcttccaccattggtg 29135999  T
Q  122 ggttggaaac 131  Q
    ||||||||||    
T  29136000 ggttggaaac 29136009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 41219572 - 41219635
Alignment:
Q  14 ttctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcg 78  Q
    ||||||| |||||| || |||||||||  |||||||||||||| |||||||||||||||||||||    
T  41219572 ttctaaggacgtatacg-ggaataccaagttcgattctcaggaggaacaacgtttggccagtgcg 41219635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 3755557 - 3755624
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctac 89  Q
    ||||||||| ||||||||   |||||||| ||||| |||||||||||| ||||||||||||| |||||    
T  3755557 acgtatccggggaataccgacttcgattcccaggaggaacaacgtttgaccagtgcgcatgtctctac 3755624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 928597 - 928685
Alignment:
Q  32 ggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggt 120  Q
    ||||||||||||||||||||||||  |||||||  ||| ||||||||||||   ||||  |||||||  ||||| |||||||| |||||    
T  928597 ggaataccagattcgattctcagggggaacaacacttgaccagtgcgcatgccgctacgcacgagccggattagtcatccacctttggt 928685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 51683074 - 51683014
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| |||||||||| |||||||| ||||  |||||||| ||| ||||||||||||    
T  51683074 acgtatccggggaataccaggttcgattcccagggggaacaacgcttgaccagtgcgcatg 51683014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 10040536 - 10040652
Alignment:
Q  14 ttctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccac 113  Q
    ||||||| ||||| ||| |||||| | | |||||||||||||  |||||||| ||||||||||||||||  |||||  |||||||  | | | | |||||    
T  10040536 ttctaaggacgtacccggggaatatcgggttcgattctcaggg-gaacaacgcttggccagtgcgcatgcctctacgcacgagccggaatggtcgtccac 10040634  T
Q  114 cgttggttggttggaaac 131  Q
    | ||||| ||||||||||    
T  10040635 ctttggtgggttggaaac 10040652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 35923732 - 35923683
Alignment:
Q  33 gaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| ||||||||  |||  |||||||||||||||||||||||||    
T  35923732 gaataccaggttcgattcatagggggaacaacgtttggccagtgcgcatg 35923683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 6462399 - 6462459
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||| | |||||||| | |||||||| ||||  |||||||| ||||||||||||||||    
T  6462399 acgtatctggggaataccgggttcgattcacagggagaacaacgcttggccagtgcgcatg 6462459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 49082803 - 49082871
Alignment:
Q  14 ttctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||| ||||||||| ||||||||   |||||||| ||||  |||||||| || |||||||||||||    
T  49082803 ttctaaggacgtatccggggaataccgagttcgattcccagggagaacaacgcttagccagtgcgcatg 49082871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 6100463 - 6100523
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||||| |||||||| | |||||||| ||||| |||||||| ||||||||||||||||    
T  6100463 acgtatccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatg 6100523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 18374004 - 18374061
Alignment:
Q  25 tatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||| | |||||||| |||||||||||||  |||||||| ||| ||||||||||||    
T  18374004 tatccgggaaataccaggttcgattctcagggagaacaacgcttgaccagtgcgcatg 18374061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 68196 - 68164
Alignment:
Q  43 ttcgattctcaggacgaacaacgtttggccagt 75  Q
    |||||||||||||| ||||||||||||||||||    
T  68196 ttcgattctcaggaggaacaacgtttggccagt 68164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 10927597 - 10927657
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||| ||| |||||||| | ||||||||  |||| |||||||| ||||||||||||||||    
T  10927597 acgtacccggggaataccgggttcgattcctaggaggaacaacgcttggccagtgcgcatg 10927657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 45726553 - 45726486
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctac 89  Q
    ||||| |||||||||||| | |||||||||||||| ||| ||| ||||||||||||| |||| |||||    
T  45726553 acgtacccgaggaatacctggttcgattctcaggaggaataacatttggccagtgcgtatgtctctac 45726486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 44969651 - 44969712
Alignment:
Q  20 gaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||| ||||| |||||||| |||||||||||||| |||||||| |||||||||| |||||    
T  44969651 gaacgtacccgagaaataccaggttcgattctcagga-gaacaacgcttggccagtgtgcatg 44969712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 45361992 - 45361942
Alignment:
Q  32 ggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||||| | |||||||||||||| |||||||| ||||||||||||||||    
T  45361992 ggaataccgggttcgattctcaggaggaacaacgcttggccagtgcgcatg 45361942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 5855510 - 5855570
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||| || |||||||| | |||||||| ||||| |||||||| ||||||||||||||||    
T  5855510 acgtattcggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatg 5855570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 16263533 - 16263593
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||| | |||||||||| |||||||  ||||| |||||||| ||||||||||||||||    
T  16263533 acgtatctggggaataccaggttcgatttccaggaggaacaacgcttggccagtgcgcatg 16263593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 31734283 - 31734358
Alignment:
Q  28 ccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaatta 104  Q
    |||||||||||  ||||||||||| |||   ||||||| ||||||||||||||||  ||||| ||||||||||||||    
T  31734283 ccgaggaatactggattcgattct-aggggaaacaacgattggccagtgcgcatgcctctacgtacgagccaaatta 31734358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 12744643 - 12744576
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctac 89  Q
    ||||||| |||||||| ||||||||||| |||||  |||||||| ||| | ||||||||||| |||||    
T  12744643 acgtatctgaggaatatcagattcgattttcagggggaacaacgcttgactagtgcgcatgtctctac 12744576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 12755633 - 12755566
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctac 89  Q
    ||||||| |||||||| ||||||||||| |||||  |||||||| ||| | ||||||||||| |||||    
T  12755633 acgtatctgaggaatatcagattcgattttcagggggaacaacgcttgactagtgcgcatgtctctac 12755566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 13265917 - 13265986
Alignment:
Q  13 attctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||||| |||||||||||||||||| | ||||||||  |||   |||||||| | |||||||||||||    
T  13265917 attctaaggacgtatccgaggaatacctggttcgattcctagggaaaacaacgtctagccagtgcgcatg 13265986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 34334424 - 34334355
Alignment:
Q  13 attctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||| ||| ||||||||| |||||||| | |||||||| ||||  |||||||  ||||||||||||||||    
T  34334424 attccaaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatg 34334355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 2567301 - 2567373
Alignment:
Q  59 aacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggttggttggaaac 131  Q
    ||||||| ||||||||||||||||  |||||| ||||| || ||||||| |||| | ||||| ||| ||||||    
T  2567301 aacaacgcttggccagtgcgcatgcctctactcacgagtcagattagccgtccatctttggtgggtcggaaac 2567373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 8764015 - 8764099
Alignment:
Q  58 gaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggttggttggaaa-cggtgcgaaag 141  Q
    |||||||  ||||||||||||||||  |||||  |||||||  ||||| | |||||||||||| ||| ||||| |||||||||||    
T  8764015 gaacaacacttggccagtgcgcatgcctctacgcacgagccggattagtcgtccaccgttggtgggtcggaaaccggtgcgaaag 8764099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 33498947 - 33498899
Alignment:
Q  34 aataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    |||||| | |||||||||||||| || ||||| ||||||||||||||||    
T  33498947 aataccgggttcgattctcaggaggagcaacgcttggccagtgcgcatg 33498899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 41663984 - 41663916
Alignment:
Q  14 ttctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||| ||||||||| |||||||| | |||||||| ||||  |||||||  |||| |||||||||||    
T  41663984 ttctaaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggtcagtgcgcatg 41663916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 49078094 - 49078162
Alignment:
Q  14 ttctaagaacgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatg 82  Q
    ||||||| ||||||||| |||||||| | |||||||| ||||   ||||||  ||||||||||||||||    
T  49078094 ttctaaggacgtatccggggaataccgggttcgattcccaggggaaacaacacttggccagtgcgcatg 49078162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 9837 - 9933
Alignment:
Q  24 gtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgcatgtttctacttacgagccaaattagccatccaccgttggt 120  Q
    ||||| |||||||||| |||||||||  ||||  |||||||| ||||||||||||||||  |||||  |||||||  ||||| | |||||| |||||    
T  9837 gtatctgaggaataccggattcgatttccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgtccacctttggt 9933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 8820 - 8763
Alignment:
Q  22 acgtatccgaggaataccagattcgattctcaggacgaacaacgtttggccagtgcgc 79  Q
    ||||||| |||||||||| | |||||||| ||||  |||||||| |||||||||||||    
T  8820 acgtatcagaggaataccgggttcgattcccagggggaacaacgcttggccagtgcgc 8763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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