View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_57 (Length: 269)
Name: NF19267_low_57
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_57 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 7214383 - 7214516
Alignment:
| Q |
16 |
tttccttcagccgaaggcattgtttgaccttattaaaaatcaaatgcatatttgtactcaacatttgttgacctttcaacaggtaagattttctagtagc |
115 |
Q |
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| T |
7214383 |
tttccttcagccgaaggcattgtttgaccttattaaaaaccaaatgcatatttgtactcaacatttgttgacctttcaacaggtaagattttctagtagc |
7214482 |
T |
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| Q |
116 |
cctactataatttaagatatttataaagtaatat |
149 |
Q |
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| T |
7214483 |
cctactataatttaagatatttataaagtaatat |
7214516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 7214545 - 7214650
Alignment:
| Q |
144 |
taatatatatcattagtatcttaatggtacacaagtggaattctatattaacatcatcaaccttattgtaagccctattgcattgacaatgcttctattt |
243 |
Q |
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||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||| |
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| T |
7214545 |
taatatatactattagtaccttaatggtacacaaatggaattctatattaacatcatccaacttattgtaggccctattgcattgac-atgcttctattt |
7214643 |
T |
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| Q |
244 |
acaatta |
250 |
Q |
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| T |
7214644 |
acaatta |
7214650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 7214976 - 7214927
Alignment:
| Q |
67 |
ttgtactcaacatttgttgacctttcaacaggtaagattttctagtagcc |
116 |
Q |
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| T |
7214976 |
ttgtactcaacatttgttgacctttcaacatgtaagagtttttagtagcc |
7214927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 41179699 - 41179737
Alignment:
| Q |
146 |
atatatatcattagtatcttaatggtacacaagtggaat |
184 |
Q |
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| T |
41179699 |
atatatatcattggtaccttaatggtacacaagtggaat |
41179737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 35341570 - 35341533
Alignment:
| Q |
147 |
tatatatcattagtatcttaatggtacacaagtggaat |
184 |
Q |
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| T |
35341570 |
tatatatcattggtaccttaatggtacacaagtggaat |
35341533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 5404010 - 5404047
Alignment:
| Q |
144 |
taatatatatcattagtatcttaatggtacacaagtgg |
181 |
Q |
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| T |
5404010 |
taatatataccattagtaccttaatggtacacaagtgg |
5404047 |
T |
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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 34231 - 34191
Alignment:
| Q |
144 |
taatatatatcattagtatcttaatggtacacaagtggaat |
184 |
Q |
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||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
34231 |
taatatataccattggtaccttaatggtacacaagtggaat |
34191 |
T |
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