View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_58 (Length: 265)
Name: NF19267_low_58
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_58 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 21099505 - 21099740
Alignment:
| Q |
19 |
acaagaactgaagtcacacgttattctaatccgctcaatctcatcaactttcaatctagtttccattaagaaaaccagttgaggatttttaactctgaga |
118 |
Q |
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| T |
21099505 |
acaagaactgaagtcacacgttattctaatccactcaatctcatcaactttcaatctagtttccattaagaaaaccagttgaggatttttaactctgaaa |
21099604 |
T |
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| Q |
119 |
agccttagtaaggctcgaactgccttcgggttacctaaccctaaacagttccaactaatgattttcattgttgtaggtggtgttggacatccaacaccac |
218 |
Q |
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| T |
21099605 |
agccttagtaaggctcgaactgccttcgggttacctaaccctaaacagttccaactgatgattttcattgttgtaggtggtgttgaacatccaacaccac |
21099704 |
T |
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| Q |
219 |
atctggtttgtttacaatagtttcaaccatcttcat |
254 |
Q |
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| T |
21099705 |
atctggtttgtttacaatagtttcaaccatcttcat |
21099740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 8370969 - 8371125
Alignment:
| Q |
71 |
aatctagtttccattaagaaaaccagttgaggatttttaactctgagaagccttagtaaggctcgaactgccttcgggttacctaaccctaaacagttcc |
170 |
Q |
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| T |
8370969 |
aatctagtttccattaagaaaactacttgaggattttggatacggatgagccttaacaaggctcgaattgcccgagggttccccaaccccctacaattcc |
8371068 |
T |
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| Q |
171 |
aactaatgattttcattgttgtaggtggtgttggacatccaacaccacatctggttt |
227 |
Q |
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| T |
8371069 |
aacttaagagtttcattggggtaggaggtgttggtcatccaacaccccctctggttt |
8371125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 20394443 - 20394496
Alignment:
| Q |
163 |
acagttccaactaatgattttcattgttgtaggtggtgttggacatccaacacc |
216 |
Q |
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| T |
20394443 |
acagttccaacttatgattttcattggtctaggcggtgttggtcatccaacacc |
20394496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 29941769 - 29941670
Alignment:
| Q |
119 |
agccttagtaaggctcgaactgccttcgggttacctaaccctaaacagttccaactaatgattttcattgttgtaggtggtgttggacatccaacaccac |
218 |
Q |
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| T |
29941769 |
agccttaacaaggctcgaactgcctggggactccctaacccccgacagttccaacttaggattttcatggttcttggcggtgttggtcatccaacaccac |
29941670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 15701647 - 15701541
Alignment:
| Q |
119 |
agccttagtaaggctcgaactgccttcgggttacctaaccctaaacagttccaactaatgattttcattgttgtaggtggtgttggacatccaacaccac |
218 |
Q |
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||||||| ||||||||||||||| ||||| || |||||| ||||||||||| | ||||||||||| |||| |||||||| ||||||||||| | |
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| T |
15701647 |
agccttaacaaggctcgaactgcccgagggttccccaaccctctgcagttccaacttaggattttcattgggataggaggtgttggtcatccaacacccc |
15701548 |
T |
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| Q |
219 |
atctggt |
225 |
Q |
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| T |
15701547 |
ctctggt |
15701541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 204454 - 204599
Alignment:
| Q |
71 |
aatctagtttccattaagaaaaccagttgaggatttttaactctgagaagccttagtaaggctcgaactgccttcgggttacctaaccctaaacagttcc |
170 |
Q |
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| T |
204454 |
aatctagtttccattaagaaaactacttgaggattttggatacggttaagccttaacaaggctcaaattgcctgagggttccccaaccccctgcaattcc |
204553 |
T |
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| Q |
171 |
aactaatgattttcattgttgtaggtggtgttggacatccaacacc |
216 |
Q |
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| T |
204554 |
aacttaagagtttcattggggtaggaggtgttggtcatccaacacc |
204599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 210531 - 210676
Alignment:
| Q |
71 |
aatctagtttccattaagaaaaccagttgaggatttttaactctgagaagccttagtaaggctcgaactgccttcgggttacctaaccctaaacagttcc |
170 |
Q |
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| T |
210531 |
aatctagtttccattaagaaaactacttgaggattttggatacggttaagccttaacaaggctcaaattgcctgagggttccccaaccccctgcaattcc |
210630 |
T |
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| Q |
171 |
aactaatgattttcattgttgtaggtggtgttggacatccaacacc |
216 |
Q |
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| T |
210631 |
aacttaagagtttcattggggtaggaggtgttggtcatccaacacc |
210676 |
T |
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