View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_low_59 (Length: 262)
Name: NF19267_low_59
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 258
Target Start/End: Complemental strand, 10613432 - 10613195
Alignment:
| Q |
24 |
attgacatatacatcttactcttcttctcttatatcaaactttaaaacaaattctaaattgattttgatatgtttttagcagattgtttcttgtgtttgc |
123 |
Q |
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| T |
10613432 |
attgacatatacatcttactcttcttctctt-tatcaaattttaaaacaaattctaaattgattttgatatgtttttagcagattgtttcttgtgtttgc |
10613334 |
T |
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| Q |
124 |
ggcttttagtacatcttccttcgatttggaagggttgtttttgggtgtgttattttggtgcttcagtgacaactctgcagtgcggctggagaaatttctg |
223 |
Q |
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| T |
10613333 |
ggcttttagtacatcttccttcgatttggaagggttgtttttgggtgtgttattttggtgcttcagtgacaactctgcagtgcggctggagaaatttctg |
10613234 |
T |
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| Q |
224 |
atg----tagcagtttttattttgcttcagatctgtgct |
258 |
Q |
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| T |
10613233 |
atgcagccagcagtttttattttgcttcagatctgtgct |
10613195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 10612154 - 10612211
Alignment:
| Q |
57 |
atcaaactttaaaacaaattctaaattgattttgatatgtttttagcagattgtttct |
114 |
Q |
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| T |
10612154 |
atcaaattttaaaacaaattcaaaattgattttgatctgtttttagcagattgtttct |
10612211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 6422564 - 6422411
Alignment:
| Q |
56 |
tatcaaactttaaaacaaattctaaattgattttgatatgtttttagcagattgtttcttgtgtttgcggcttttagtacatcttccttcgatttggaag |
155 |
Q |
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| T |
6422564 |
tatcaaattttaatacaaattctaaattcattttgatctgtttttagcagattgtttcttctgttgacggctttttgt--atctgcgctcgttttggaag |
6422467 |
T |
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| Q |
156 |
ggttgtttttgggtgtgttattttggtgcttcagtgacaactctgcagtgcggctg |
211 |
Q |
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| T |
6422466 |
ggatgtttttgggtgagttctttcggtgcttcggtgatcactttgcagtgcagctg |
6422411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 7118703 - 7118616
Alignment:
| Q |
66 |
taaaacaaattctaaattgattttgatatgtttttagcagattgtttcttgtgtttgcggcttttagtacatcttccttcgatttggaag |
155 |
Q |
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| T |
7118703 |
taaaacaaattctaaatagatttttaactgtttttagcagattgtttcttgtgttggcggcttttagt--atcttccttcattttggaag |
7118616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 7131181 - 7131094
Alignment:
| Q |
66 |
taaaacaaattctaaattgattttgatatgtttttagcagattgtttcttgtgtttgcggcttttagtacatcttccttcgatttggaag |
155 |
Q |
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| T |
7131181 |
taaaacaaattctaaatagatttttaactgtttttagcagattgtttcttgtgttggcgggttttagt--atcttccttcattttggaag |
7131094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 6402426 - 6402361
Alignment:
| Q |
46 |
tcttctcttatatcaaactttaaaacaaattctaaattgattttgatatgtttttagcagattgttt |
112 |
Q |
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| T |
6402426 |
tcttctctt-tatcaaattttaatacaaattctaaattgactttgatctgtttttaacagattgttt |
6402361 |
T |
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