View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19267_low_6 (Length: 624)

Name: NF19267_low_6
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19267_low_6
NF19267_low_6
[»] chr3 (18 HSPs)
chr3 (72-329)||(48531600-48531858)
chr3 (13-286)||(48528882-48529156)
chr3 (377-606)||(8431412-8431642)
chr3 (377-514)||(43073040-43073178)
chr3 (377-517)||(31525360-31525501)
chr3 (388-508)||(28934741-28934861)
chr3 (377-514)||(10454279-10454422)
chr3 (387-523)||(44656229-44656369)
chr3 (395-514)||(47820897-47821022)
chr3 (377-514)||(9358743-9358883)
chr3 (391-514)||(53349401-53349527)
chr3 (377-508)||(52076066-52076203)
chr3 (388-508)||(20701152-20701275)
chr3 (384-508)||(28956952-28957079)
chr3 (13-64)||(48531969-48532020)
chr3 (377-508)||(42881885-42882019)
chr3 (395-514)||(46750212-46750333)
chr3 (455-514)||(55166895-55166955)
[»] chr1 (14 HSPs)
chr1 (387-592)||(31833817-31834019)
chr1 (377-517)||(12172951-12173092)
chr1 (377-602)||(19472716-19472938)
chr1 (396-514)||(46757306-46757425)
chr1 (377-514)||(26990601-26990739)
chr1 (395-514)||(42442019-42442142)
chr1 (377-514)||(47028931-47029072)
chr1 (377-508)||(8462964-8463097)
chr1 (377-514)||(38548673-38548815)
chr1 (389-508)||(41955891-41956016)
chr1 (424-514)||(43268645-43268739)
chr1 (372-514)||(26384960-26385105)
chr1 (377-508)||(28447722-28447857)
chr1 (377-513)||(43460698-43460843)
[»] chr7 (14 HSPs)
chr7 (377-514)||(46691839-46691981)
chr7 (377-508)||(30655592-30655727)
chr7 (377-508)||(22197675-22197810)
chr7 (377-508)||(22240011-22240146)
chr7 (388-508)||(36615808-36615927)
chr7 (377-517)||(31424766-31424912)
chr7 (377-508)||(1039057-1039191)
chr7 (395-508)||(49035865-49035983)
chr7 (389-511)||(41702867-41702992)
chr7 (399-508)||(33320710-33320817)
chr7 (548-602)||(30655761-30655815)
chr7 (377-517)||(32678937-32679083)
chr7 (377-514)||(43397640-43397781)
chr7 (377-448)||(42598053-42598124)
[»] chr2 (6 HSPs)
chr2 (384-520)||(38908663-38908800)
chr2 (387-514)||(41419617-41419748)
chr2 (377-514)||(14732334-14732473)
chr2 (396-514)||(41378216-41378332)
chr2 (377-508)||(22649059-22649193)
chr2 (395-448)||(43356750-43356803)
[»] chr8 (14 HSPs)
chr8 (377-514)||(40930824-40930961)
chr8 (377-507)||(13959213-13959347)
chr8 (375-514)||(24200614-24200753)
chr8 (377-514)||(25829259-25829399)
chr8 (377-514)||(5200476-5200615)
chr8 (378-514)||(22839250-22839391)
chr8 (388-514)||(38086419-38086551)
chr8 (441-508)||(10124866-10124935)
chr8 (377-514)||(30836122-30836272)
chr8 (377-420)||(7845135-7845178)
chr8 (377-448)||(44362923-44362994)
chr8 (284-345)||(38542725-38542786)
chr8 (380-435)||(584132-584187)
chr8 (455-514)||(7845080-7845138)
[»] chr4 (11 HSPs)
chr4 (387-508)||(16572074-16572198)
chr4 (377-506)||(47571565-47571694)
chr4 (377-514)||(32183275-32183419)
chr4 (377-473)||(15186975-15187072)
chr4 (284-371)||(5341706-5341793)
chr4 (377-511)||(55133102-55133233)
chr4 (377-514)||(25641263-25641407)
chr4 (377-515)||(16662301-16662441)
chr4 (377-513)||(42390766-42390906)
chr4 (311-371)||(25222218-25222278)
chr4 (377-421)||(45511396-45511440)
[»] chr5 (10 HSPs)
chr5 (395-514)||(23172985-23173107)
chr5 (389-514)||(22887211-22887337)
chr5 (389-523)||(25539810-25539947)
chr5 (377-514)||(9931791-9931935)
chr5 (388-508)||(819134-819254)
chr5 (377-514)||(3677784-3677924)
chr5 (377-508)||(10431063-10431198)
chr5 (377-499)||(42241583-42241708)
chr5 (456-508)||(2292168-2292222)
chr5 (377-429)||(9597748-9597800)
[»] chr6 (8 HSPs)
chr6 (377-508)||(33112709-33112844)
chr6 (377-514)||(10246910-10247049)
chr6 (377-602)||(11546685-11546905)
chr6 (380-515)||(6575720-6575860)
chr6 (377-514)||(15859093-15859239)
chr6 (377-602)||(34761080-34761300)
chr6 (455-514)||(33984753-33984814)
chr6 (386-429)||(12754422-12754465)
[»] scaffold0209 (1 HSPs)
scaffold0209 (380-435)||(12892-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (373-429)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-129; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 72 - 329
Target Start/End: Complemental strand, 48531858 - 48531600
Alignment:
Q  72 aaacatgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgt 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531858 aaacatgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgt 48531759  T
Q  172 gccagattcttggtaacatatgatttgtatcatctaagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagc-gttgtatttatg 270  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  48531758 gccatattcttggtaacaaatgatttgtatcatataagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatg 48531659  T
Q  271 agatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtggtgttggt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531658 agatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtggtgttggt 48531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 48529156 - 48528882
Alignment:
Q  13 aatatatatgtcaatgtttaaaatactttctatttgataaattactttgccaataacagaaacatgtttgacttgaaaaaggactgcaaattatgtt-ca 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||    
T  48529156 aatatatatgtcaatgtttgaaatactttctatttgataaattactttgccaataacaaaaacatgtttgacttgaaaaagggctgcaaattatgtttca 48529057  T
Q  112 ttctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagac 211  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||    
T  48529056 ttctagtcttgtaattgtatatgtttggtgtttagttgtatttaaaaagcatgttggtgtgccatattctaggtaacaaatgatttgtatcatctaagac 48528957  T
Q  212 tttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagatatgagaagctaa 286  Q
    |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48528956 tttgagcagacagaactgttcacctatcacgtcttgtttgcaagagcattgtatttatgagatatgagaagctaa 48528882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 377 - 606
Target Start/End: Original strand, 8431412 - 8431642
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 476  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8431412 tttttgaaacggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcaaca 8431511  T
Q  477 aaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggac-acaaaaataatgacgcagacatatacaaatgacaa 575  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||    
T  8431512 aaacaccggctcgaacaaaaaccccttaaaaaccaccccaacactaaggcactaactaccggtcaaaaaaaaaaatgacgcagacatatacaaatgacaa 8431611  T
Q  576 tccgcaagcatacccctgcatcaacactcat 606  Q
    |||||||||||||||||||||||||||||||    
T  8431612 tccgcaagcatacccctgcatcaacactcat 8431642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 43073040 - 43073178
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggttgccac 475  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || ||||||||| | || ||||||||||||||||||||      
T  43073040 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaaaagaatacaaggggaaatcggttgcctt 43073139  T
Q  476 aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43073140 aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 31525501 - 31525360
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 476  Q
    |||||||| |||||||| |||||||||||| ||||| |||||||| ||||||| ||||| || ||||||||| | | |||||||||||||||||||||||    
T  31525501 tttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttgccaca 31525402  T
Q  477 -aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 517  Q
     ||||| |||||||||||||||||||||||||||||||||||    
T  31525401 caaacaacggctcgaacaaaaaccccttaaaaaccaccctaa 31525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 388 - 508
Target Start/End: Original strand, 28934741 - 28934861
Alignment:
Q  388 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggttgccacaaaacaccggc 486  Q
    |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| |||||  || |||||||||||||||||||||| ||||||||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggttgccac-aaacaccggc 28934839  T
Q  487 tcgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||||||||||||    
T  28934840 tcgaacaaaaaccccttaaaaa 28934861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 10454422 - 10454279
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-----aaaaaataaacacaaggggaaatcggttg 471  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||  ||||||| |||||||| |||     |||||||| | ||||||||||||||||||    
T  10454422 tttttgaaatggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaaaaaaaatacatacaaggggaaatcggttg 10454323  T
Q  472 ccacaa-aacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    |||||| ||  ||||||| |||||||||||||||||||||||||    
T  10454322 ccacaagaaagccggctcaaacaaaaaccccttaaaaaccaccc 10454279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 387 - 523
Target Start/End: Original strand, 44656229 - 44656369
Alignment:
Q  387 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac---acaaggggaaatcggttgccacaaaacac 482  Q
    ||||||| |||||||||||| ||||||||||||||||||| || |||||||| |||| ||||| ||||   ||||||| ||||||||||||| | |||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggagaaaaaaaaaccatacaagggaaaatcggttgccatataacac 44656328  T
Q  483 cggctcgaacaaaaaccccttaaaaaccaccctaacactaa 523  Q
     | |||||||||||| ||||||||||||||||||| |||||    
T  44656329 agactcgaacaaaaatcccttaaaaaccaccctaaaactaa 44656369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 47821022 - 47820897
Alignment:
Q  395 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcg 489  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||    |||||||| | | |||||||||||||||||| || |||||||||||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggctcg 47820923  T
Q  490 aacaaaaacccc-ttaaaaaccaccc 514  Q
    |||||||||||| |||||||||||||    
T  47820922 aacaaaaacccctttaaaaaccaccc 47820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 9358743 - 9358883
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcggttgccac 475  Q
    |||||||| |||||||| ||||||| |||| |||||||||| ||| | ||||| ||||| || |||| |||| || | | |||||||||||||||||| |    
T  9358743 tttttgaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgc 9358842  T
Q  476 a-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 514  Q
    | ||||||||||||||||||||||||| |||||||||||||    
T  9358843 acaaacaccggctcgaacaaaaacccctttaaaaaccaccc 9358883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 391 - 514
Target Start/End: Complemental strand, 53349527 - 53349401
Alignment:
Q  391 aaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccggct 487  Q
    |||||||||||||||| |||| | ||||||| ||||||| || || || ||| |||| ||||||  |||||| |||||||||||| || |||||||||||    
T  53349527 aaaaattattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggct 53349428  T
Q  488 cgaacaaaaaccccttaaaaaccaccc 514  Q
    | |||||||||||||||||||||||||    
T  53349427 caaacaaaaaccccttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 377 - 508
Target Start/End: Complemental strand, 52076203 - 52076066
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga------aaaaataaacacaaggggaaatcggtt 470  Q
    |||||||| |||||||| |||| ||||||| |||||||||| ||| ||||||| |||||||| ||||      ||||||| | |||||||| ||||||||    
T  52076203 tttttgaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggagaaaaaaaaaatacaaacaaggggtaatcggtt 52076104  T
Q  471 gccacaaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    |||| ||||||   ||||||||||||||||||||||||    
T  52076103 gccataaaacaaacgctcgaacaaaaaccccttaaaaa 52076066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 388 - 508
Target Start/End: Complemental strand, 20701275 - 20701152
Alignment:
Q  388 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcggttgccacaaaacaccg 484  Q
    |||||| ||||||||||||  ||||||| ||||| ||||||| |||||||| || |   ||||||| | |||||||||||||| |||||||| |||  ||    
T  20701275 gcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcgattgccacacaactacg 20701176  T
Q  485 gctcgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||||||||||||||    
T  20701175 gctcgaacaaaaaccccttaaaaa 20701152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 384 - 508
Target Start/End: Complemental strand, 28957079 - 28956952
Alignment:
Q  384 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaac 480  Q
    |||| ||||| |||||||||||| ||| ||||||||||  |||| | |||||||| ||  ||||| ||||| |  |||||||||||||||||||| ||||    
T  28957079 aacgacaaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaac 28956980  T
Q  481 accggctcgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||||||||||||| ||||    
T  28956979 accggctcgaacaaaaacccctttaaaa 28956952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 48532020 - 48531969
Alignment:
Q  13 aatatatatgtcaatgtttaaaatactttctatttgataaattactttgcca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48532020 aatatatatgtcaatgtttaaaatactttctatttgataaattactttgcca 48531969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 377 - 508
Target Start/End: Complemental strand, 42882019 - 42881885
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca----caaggggaaatcggttgc 472  Q
    ||||| || |||||||| ||||||| |||| |||| ||| ||||||||||||| ||||||||  |||||||| | |||    ||||||||||||| ||||    
T  42882019 tttttaaatcggcaaaatattatta-ccaacaagctcgtacaagatgcactaaaaagctcgggaggaaaaaaaacacaaatacaaggggaaatcgattgc 42881921  T
Q  473 cacaaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    ||||| |||||||||| ||||||||| |||||||||    
T  42881920 cacaatacaccggctcaaacaaaaacgccttaaaaa 42881885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 514
Target Start/End: Complemental strand, 46750333 - 46750212
Alignment:
Q  395 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatg---gaaaaaataaacacaaggggaaatcggttgccacaaaacaccggctcgaa 491  Q
    |||||||||||| ||  | || ||||||||||||| |||||||| ||   ||||||  ||| |||| || |||||||||||| ||||||||||| |||||    
T  46750333 attattaaccaacaaatctgtacaagatgcactaataagctcgggtgaaagaaaaagaaaatacaaaggaaaatcggttgccgcaaaacaccggttcgaa 46750234  T
Q  492 caaaaaccccttaaaaaccaccc 514  Q
    |||||| ||||||||||||||||    
T  46750233 caaaaa-cccttaaaaaccaccc 46750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 514
Target Start/End: Original strand, 55166895 - 55166955
Alignment:
Q  455 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    ||||||||||||||||||| || ||||   |||||||||||||||||||||||||||||||    
T  55166895 caaggggaaatcggttgccgcacaaactttggctcgaacaaaaaccccttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 387 - 592
Target Start/End: Complemental strand, 31834019 - 31833817
Alignment:
Q  387 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggc 486  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||||||||| || ||||||   | ||||||| ||||||||||||||| |||||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaa---atacaagggaaaatcggttgccacataacaccggc 31833923  T
Q  487 tcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatgacaatccgcaagcat 586  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  31833922 tcgaacaaaaaccccttaaaaaccaccccaacactaaggcacaaactaccagtcacaaaagtaatgacgcagacatatacaaatggcaatccgcaagcat 31833823  T
Q  587 acccct 592  Q
    ||||||    
T  31833822 acccct 31833817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 12173092 - 12172951
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 476  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | |||||||||||||||||||||||    
T  12173092 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttgccaca 12172993  T
Q  477 -aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 517  Q
     ||||| | |||||||||||||||||||||||||||||||||    
T  12172992 caaacatcagctcgaacaaaaaccccttaaaaaccaccctaa 12172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 377 - 602
Target Start/End: Complemental strand, 19472938 - 19472716
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcggttgcca 474  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||  ||||||||| | | ||||||||||| |||||||    
T  19472938 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgcca 19472839  T
Q  475 ca-aaacaccggctcgaacaaaaa-ccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatga 572  Q
     | |||| |||||||||||||||| ||| |||||||||||||  | ||||||| ||  ||       ||||| | ||||||||||| ||||||||| |||    
T  19472838 tacaaactccggctcgaacaaaaatccctttaaaaaccacccataaactaaggaacacac-------cacaagagtaatgacgcaggcatatacaagtga 19472746  T
Q  573 caatccgcaagcatacccctgcatcaacac 602  Q
    ||  || |||||||||||||||||||||||    
T  19472745 cagaccacaagcatacccctgcatcaacac 19472716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 396 - 514
Target Start/End: Complemental strand, 46757425 - 46757306
Alignment:
Q  396 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaa-aacaccggctcgaacaa 494  Q
    ||||||||||| |||||||||||||||||||||| |||||| | |||||||||  || | |||||||||||| ||||||||| |||||| ||||||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaaacaatataaggggaaatcgattgccacaataacaccagctcgaacaa 46757326  T
Q  495 aaaccccttaaaaaccaccc 514  Q
    |||||| |||||||||||||    
T  46757325 aaaccctttaaaaaccaccc 46757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 26990739 - 26990601
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 476  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||| |||||| ||||| ||    
T  26990739 tttttgaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaagggaaaatcgattgccgca 26990640  T
Q  477 -aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
     || ||||||||| |||||||| ||||||||||||||||    
T  26990639 caagcaccggctcaaacaaaaatcccttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 42442019 - 42442142
Alignment:
Q  395 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgccac-aaaacaccggctcga 490  Q
    |||||||||||| ||| |||||||||| ||||||| |||||||| || |||||| ||   | |||| ||||||||||||||||  ||||||||| |||||    
T  42442019 attattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgactcga 42442118  T
Q  491 acaaaaaccccttaaaaaccaccc 514  Q
    ||||||||||||||||||||||||    
T  42442119 acaaaaaccccttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 47029072 - 47028931
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-----taaacacaaggggaaatcggttg 471  Q
    ||||||||||||| ||| ||||  |||||| |||  ||||||||| ||| ||| |||||||| |||||||||     |||| ||||||||||||||||||    
T  47029072 tttttgaaacggccaaatatta--aaccaacaagttcgtgcaagacgcattaataagctcgggtggaaaaaaaaacataaatacaaggggaaatcggttg 47028975  T
Q  472 ccacaaaa-caccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    || ||||| |||||||||||||||||||||||||||||| ||||    
T  47028974 ccgcaaaaacaccggctcgaacaaaaaccccttaaaaactaccc 47028931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 377 - 508
Target Start/End: Original strand, 8462964 - 8463097
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcggttgcca 474  Q
    ||||||||| || |||| |||||||||||| |||| ||||||||| |||||||  ||||||| ||  ||||||||| | ||||||| |||||||||||||    
T  8462964 tttttgaaatgg-aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcggttgcca 8463062  T
Q  475 c-aaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    | |||||  ||||||||||||||||||||||||||    
T  8463063 caaaaacgtcggctcgaacaaaaaccccttaaaaa 8463097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 38548815 - 38548673
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaaca--caaggggaaatcggttgc 472  Q
    |||||||| |||||||| |||||||||||| || ||||||||||| ||||||| |||||||| |||  |||||| |||||  ||||||||||||||||||    
T  38548815 tttttgaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaaaaaaaaacaagcaaggggaaatcggttgc 38548716  T
Q  473 caca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    || | |||    ||||||||||||  |||||||||||||||||    
T  38548715 catacaaaatttggctcgaacaaaccccccttaaaaaccaccc 38548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 389 - 508
Target Start/End: Original strand, 41955891 - 41956016
Alignment:
Q  389 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-----acacaaggggaaatcggttgccacaa-aacac 482  Q
    ||||| |||||||||||| ||   |||||||||| |||||| ||||| ||||||| |||| ||     | ||||||||||||||||||||| || |||||    
T  41955891 caaaatattattaaccaacaaattcgtgcaagatacactaataagcttggatggagaaaaaaactaaaatacaaggggaaatcggttgccataataacac 41955990  T
Q  483 cggctcgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||||| ||||||||||    
T  41955991 cggctcgaacaaaaatcccttaaaaa 41956016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 43268645 - 43268739
Alignment:
Q  424 cactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 514  Q
    |||||| |||||||| |||| |||| ||||| |  ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  43268645 cactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 372 - 514
Target Start/End: Complemental strand, 26385105 - 26384960
Alignment:
Q  372 gtttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcgg 468  Q
    |||| |||||||||| | |||| |||||||||| | |||||||| ||||| || |||| ||||| || ||||||||| ||   | |||| ||||||||||    
T  26385105 gtttttttttgaaacagtaaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtggaaaaaaaaatacaaacaaagggaaatcgg 26385007  T
Q  469 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    ||| || | ||||||| |||| ||||||| |||||||||||||||||    
T  26385006 ttgtcatacaaacaccagctcaaacaaaacccccttaaaaaccaccc 26384960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 508
Target Start/End: Complemental strand, 28447857 - 28447722
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgcc 473  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||  |||  || |||||| ||   | ||||||| |||||||||||     
T  28447857 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataaattcgagtgaaaaaaaaaagacaaacaagggaaaatcggttgca 28447758  T
Q  474 aca-aaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    | | ||||| | || |||||||||||| ||||||||    
T  28447757 atataaacatcagcacgaacaaaaacctcttaaaaa 28447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 513
Target Start/End: Complemental strand, 43460843 - 43460698
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg----gaaaaaataaac--acaaggggaaatcggtt 470  Q
    |||||||| || ||||| |||||||||||| ||| | |||| ||| ||||||| |||||  | ||    ||||||| ||||  | |||||||||||||||    
T  43460843 tttttgaatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaatcggtt 43460744  T
Q  471 gcca--caaaacaccggctcgaacaaaaacccctt-aaaaaccacc 513  Q
    || |  |||||||| | |||||||||||||||||| ||||||||||    
T  43460743 gcgatacaaaacactgactcgaacaaaaaccccttcaaaaaccacc 43460698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 46691839 - 46691981
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 472  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||    |||||||| | |||||||||||||||||||    
T  46691839 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgc 46691938  T
Q  473 caca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  46691939 cacataaacaccggctcgaacaaaaaccccttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 377 - 508
Target Start/End: Original strand, 30655592 - 30655727
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgc-- 472  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||||||||||||||||      
T  30655592 tttttgaaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcggttgcca 30655691  T
Q  473 cacaaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    ||||||| | || |||||||||||||| ||||||||    
T  30655692 cacaaaatatcgactcgaacaaaaacctcttaaaaa 30655727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 377 - 508
Target Start/End: Complemental strand, 22197810 - 22197675
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaatcggttg 471  Q
    |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     ||||||||||||| ||     
T  22197810 tttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaatcgatta 22197712  T
Q  472 ccacaaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22197711 ccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22197675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 377 - 508
Target Start/End: Original strand, 22240011 - 22240146
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaatcggttg 471  Q
    |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     ||||||||||||| ||     
T  22240011 tttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaatcgatta 22240109  T
Q  472 ccacaaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22240110 ccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22240146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 388 - 508
Target Start/End: Original strand, 36615808 - 36615927
Alignment:
Q  388 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggct 487  Q
    |||||| ||||||| |||| |||||||||||||| ||||||| |||||||| |||||||||  || |||||||||||||||||||||| |||| || |||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaacaaaacaaggggaaatcggttgccac-aaactccagct 36615906  T
Q  488 cgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||| |||||||    
T  36615907 cgaacaaaaaccctttaaaaa 36615927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 377 - 517
Target Start/End: Original strand, 31424766 - 31424912
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcggttgcca 474  Q
    |||||||| |||||||| |||||||||||| || |||||||||||  |||||| ||||| || |||| |||| ||||  | |||||||||||||||||||    
T  31424766 tttttgaagcggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggttgcca 31424865  T
Q  475 --caaaacaccggctcgaacaaaaacccctt--aaaaaccaccctaa 517  Q
      | |||||||||||||| ||||||||||||  ||||||||||||||    
T  31424866 ttcgaaacaccggctcgatcaaaaacccctttaaaaaaccaccctaa 31424912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 377 - 508
Target Start/End: Original strand, 1039057 - 1039191
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcggttgcca 474  Q
    ||||| ||||||||||| |||||||||| | |||||||||||||| ||||||| |||||||| |||| |||| ||||  ||||||| ||||||||||| |    
T  1039057 tttttcaaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtggataaaaaaaacaaacaagggaaaatcggttgcaa 1039156  T
Q  475 ca-aaacaccggctcgaacaaaaaccccttaaaaa 508  Q
     | ||||   |||||||||||||||||||||||||    
T  1039157 tacaaactttggctcgaacaaaaaccccttaaaaa 1039191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 395 - 508
Target Start/End: Original strand, 49035865 - 49035983
Alignment:
Q  395 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa----acacaaggggaaatcggttgccaca-aaacaccggctcg 489  Q
    |||||||||||| ||| |||| ||||| ||||||| |||||||| |||| |||| ||    | ||||||||||||||||||||||| ||||||||| |||    
T  49035865 attattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggttcg 49035964  T
Q  490 aacaaaaaccccttaaaaa 508  Q
    |||||||||||||||||||    
T  49035965 aacaaaaaccccttaaaaa 49035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 389 - 511
Target Start/End: Complemental strand, 41702992 - 41702867
Alignment:
Q  389 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccgg 485  Q
    ||||| ||||| ||||||  ||||||||||||  ||||||| ||| | || |||| |||| |||||  ||||||||| ||||||||| || |||||||||    
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  486 ctcgaacaaaaaccccttaaaaacca 511  Q
    ||||||||||||||||||||||||||    
T  41702892 ctcgaacaaaaaccccttaaaaacca 41702867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 399 - 508
Target Start/End: Complemental strand, 33320817 - 33320710
Alignment:
Q  399 ttaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaaaaa 497  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||| |||   ||| |||||||||||| |||||||  | ||||||||||||||||||||     
T  33320817 ttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaa---aaaaacaaggggaaattggttgccttacaaacaccggctcgaacaaaac 33320721  T
Q  498 ccccttaaaaa 508  Q
    |||||||||||    
T  33320720 ccccttaaaaa 33320710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 548 - 602
Target Start/End: Original strand, 30655761 - 30655815
Alignment:
Q  548 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 602  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||    
T  30655761 taatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacac 30655815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 32679083 - 32678937
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-----gaaaaaataaacacaaggggaaatcggttg 471  Q
    ||||| ||||||| |||  ||||||||||| |||||||||||||| ||||||| |||||||  ||      |||||| ||| ||||||  |||||| |||    
T  32679083 ttttttaaacggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctcgagtgaaaaaaaaaaaaaaaatacaaggaaaaatcgattg 32678984  T
Q  472 ccac-aaaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 517  Q
    || | |||| || |||| |||||||||||||||||||||||| ||||    
T  32678983 ccgctaaaatactggctggaacaaaaaccccttaaaaaccactctaa 32678937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 43397781 - 43397640
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca------caaggggaaatcggtt 470  Q
    |||||||| ||||||| | ||||||||||| || ||||||||||| ||||||| ||||| || || |||||| ||| |      ||| || ||||| |||    
T  43397781 tttttgaatcggcaaata-ttattaaccaataaacccgtgcaagaagcactaa-aagcttgggtgaaaaaaaaaaaaaaacatacaaaggaaaatctgtt 43397684  T
Q  471 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    ||||||||||| | |||||||||||||||| | |||||||||||    
T  43397683 gccacaaaacaactgctcgaacaaaaacccttaaaaaaccaccc 43397640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 448
Target Start/End: Complemental strand, 42598124 - 42598053
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 448  Q
    ||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| ||||| || |||| ||||    
T  42598124 tttttaaaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggagaaaa 42598053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 8e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 384 - 520
Target Start/End: Complemental strand, 38908800 - 38908663
Alignment:
Q  384 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-taaacacaaggggaaatcggttgccacaaaacac 482  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||| || |||||| |||| ||||||| |||||||| ||||||||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaaaataaatacaagggaaaatcggtagccacaaaacac 38908701  T
Q  483 cggctcgaacaaaaaccccttaaaaaccaccctaacac 520  Q
    ||| |||||||||||||||||||||||||||| |||||    
T  38908700 cggttcgaacaaaaaccccttaaaaaccaccccaacac 38908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 387 - 514
Target Start/End: Complemental strand, 41419748 - 41419617
Alignment:
Q  387 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgccacaa-aacac 482  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||   |||||| ||| ||||||||||||||||||||| || |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  483 cggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    || |||||||||||||||||||||||||||||    
T  41419648 cgactcgaacaaaaaccccttaaaaaccaccc 41419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 14732334 - 14732473
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat-ggaaaaaataaacacaaggggaaatcggttgccac 475  Q
    ||||||||| ||||||| |||||||||||| |||||||||| || |||||||| |||||||| | ||||||||  || ||||||||||||||||| || |    
T  14732334 tttttgaaaaggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaaaaataatacaaggggaaatcggttaccgc 14732433  T
Q  476 -aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
     |||| ||| ||||||||||||||||||||||||||||||    
T  14732434 aaaaataccagctcgaacaaaaaccccttaaaaaccaccc 14732473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 396 - 514
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  396 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaa 494  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    ||| ||||||||||||||||||||| |||| |||||||||| ||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaat---aca-aaggggaaatcggttgccacacaaactccggctcgaataa 41378311  T
Q  495 aaacccc-ttaaaaaccaccc 514  Q
    ||||||| |||||||||||||    
T  41378312 aaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 377 - 508
Target Start/End: Original strand, 22649059 - 22649193
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggttgcca- 474  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||| | ||||| ||||| || | || ||||| | | | |||||||||||||||||||     
T  22649059 tttttgaagcggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagagaaaaaaacaaagaaggggaaatcggttgccat 22649158  T
Q  475 -caaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
     | ||||||||||| || |||||||||||| ||||    
T  22649159 tccaaacaccggcttgatcaaaaacccctttaaaa 22649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 448
Target Start/End: Complemental strand, 43356803 - 43356750
Alignment:
Q  395 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 448  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||| || ||||||    
T  43356803 attattaaccaataagtccgtgcaagatgcactaataagttcgggtgaaaaaaa 43356750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 40930824 - 40930961
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-aaaaaataaacacaaggggaaatcggttgccac 475  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||||| | |||||||||||||||||| |||    
T  40930824 tttttgaaatggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggttgtcac 40930923  T
Q  476 aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
     ||||| |||||||||||||||| |||||||||||||||    
T  40930924 -aaacaacggctcgaacaaaaactccttaaaaaccaccc 40930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 377 - 507
Target Start/End: Original strand, 13959213 - 13959347
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgcc 473  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| |||   |||||||| | |||| || ||||||||||||    
T  13959213 tttttgaaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaaaaaatacaaacaaaggaaaatcggttgcc 13959312  T
Q  474 aca-aaacaccggctcgaacaaaaaccccttaaaa 507  Q
    ||| |||||||||||| ||||||||||||||||||    
T  13959313 acataaacaccggctcaaacaaaaaccccttaaaa 13959347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 375 - 514
Target Start/End: Original strand, 24200614 - 24200753
Alignment:
Q  375 tatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcca 474  Q
    ||||||| || |||||||| |||||||| ||| ||| |||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||||     
T  24200614 tattttttaatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaaggggaaatcggttgccg 24200713  T
Q  475 c-aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    | |||||||||||||||||||||| | ||||||||||||||    
T  24200714 caaaaacaccggctcgaacaaaaa-cacttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 25829259 - 25829399
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgcc 473  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | ||||||||||||||||| ||    
T  25829259 tttttgaatcggcaaata-ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaaatacaaacaaggggaaatcggtttcc 25829357  T
Q  474 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
      | ||||||||||| ||| ||||||||||||||||||||||    
T  25829358 ctataaacaccggcttgaataaaaaccccttaaaaaccaccc 25829399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 5200476 - 5200615
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcggttgccac 475  Q
    ||||| || |||||||| |||||||||||| ||| ||||||||||  |||||| ||| | || |||| |||| || | ||||||| |||||||||||| |    
T  5200476 ttttttaatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcggttgccgc 5200575  T
Q  476 a-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    | |||||||||||||||||||||||||||||||| |||||    
T  5200576 acaaacaccggctcgaacaaaaaccccttaaaaatcaccc 5200615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 378 - 514
Target Start/End: Complemental strand, 22839391 - 22839250
Alignment:
Q  378 ttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga--aaaaataaacacaaggggaaatcggttgcc-- 473  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||| |||||||||  ||||| | | | ||| ||||||||||||||      
T  22839391 ttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccat 22839292  T
Q  474 acaaaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 514  Q
    | |||||| ||||||||||||||| ||| |||||||||||||    
T  22839291 ataaaacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 388 - 514
Target Start/End: Original strand, 38086419 - 38086551
Alignment:
Q  388 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgccaca-aaacacc 483  Q
    |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | | ||||| ||||||||||||| | |||| |     
T  38086419 gcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccatacaaactct 38086518  T
Q  484 ggctcgaacaaaaacccctt--aaaaaccaccc 514  Q
    ||||||||||||||||||||  |||||||||||    
T  38086519 ggctcgaacaaaaacccctttaaaaaaccaccc 38086551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 508
Target Start/End: Complemental strand, 10124935 - 10124866
Alignment:
Q  441 ggaaaaaataaacacaaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    |||||||| | | ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  10124935 ggaaaaaaaacaaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 10124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 30836122 - 30836272
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaac----aagctcggatgga-------aaaaataaacacaaggggaaat 465  Q
    |||||||| |||||||| |||||||||||| |||| ||||| ||| |||||||     |||||||||||||       ||||| ||| | ||||||||||    
T  30836122 tttttgaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggagaaaaaaaaaaaaaaaaagaaggggaaat 30836221  T
Q  466 cggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 514  Q
    || ||||| || ||| ||||||||||||||||||||| |||||||||||||    
T  30836222 cgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccaccc 30836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 7845178 - 7845135
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaag 420  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  7845178 tttttgaaacggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 448
Target Start/End: Original strand, 44362923 - 44362994
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 448  Q
    |||||||||||| |||  |||||||||||| || || |||||||| ||||||| ||| ||||||||||||||    
T  44362923 tttttgaaacggaaaattattattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaaa 44362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 38542725 - 38542786
Alignment:
Q  284 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtg 345  Q
    |||||||||||||| ||||| || | ||||||||| || |||||||||||||||| ||||||    
T  38542725 taagagaaaacaactttgaaagaaagtgagaggaaatgatgttggtgatgtgagaatgagtg 38542786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 584132 - 584187
Alignment:
Q  380 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 435  Q
    |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  584132 ttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 7845138 - 7845080
Alignment:
Q  455 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    |||||||||||||||||| |||  |||||||||||||||  || |||||||||||||||||    
T  7845138 caaggggaaatcggttgcaacattaacaccggctcgaac--aatccccttaaaaaccaccc 7845080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 387 - 508
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  387 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccac-aaaacacc 483  Q
    ||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||  |||||||||| |||||||||||||||||||| | ||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  484 ggctcgaacaaaaaccccttaaaaa 508  Q
    || |||||||||| ||| |||||||    
T  16572098 ggttcgaacaaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 377 - 506
Target Start/End: Original strand, 47571565 - 47571694
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcggttgccac 475  Q
    |||||||| |||||||| |||||||||||| || |||||| |||  ||||||| |||||||| ||  |||||||||| ||||||| |||| |||||||||    
T  47571565 tttttgaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaaaataaatacaagggaaaattggttgccac 47571664  T
Q  476 aaaacaccggctcgaacaaaaaccccttaaa 506  Q
     |||||||||||| |||||||||||||||||    
T  47571665 -aaacaccggctcaaacaaaaaccccttaaa 47571694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 32183419 - 32183275
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaag-aagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacaca--aggggaaatcggttgc 472  Q
    ||||| || |||||||| ||||||||||||  |||||||||||||  ||||||| |||||||| ||||| |||| ||||| |  ||||||||||||||||    
T  32183419 tttttaaatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgc 32183320  T
Q  473 caca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 514  Q
    || | |||||||||||||||||||||||||||  |||||||||||    
T  32183319 catacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 32183275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 15186975 - 15187072
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggttgcc 473  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||| |||||  || ||||||||||||||||||||    
T  15186975 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggataaaaaagaatacaaggggaaatcggttgcc 15187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 5341793 - 5341706
Alignment:
Q  284 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatgtatttataggagct 371  Q
    ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| | ||||||  | ||||||||||||||    
T  5341793 taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgtgagagtgagtctgagggtttgtttatttataggagct 5341706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 511
Target Start/End: Original strand, 55133102 - 55133233
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 476  Q
    ||||||||||| ||||| ||||||||||   |||||||||||||| ||||||| || |||||||| ||| || | | |||| ||||||| | ||||||||    
T  55133102 tttttgaaacgacaaaatattattaacc---aagcccgtgcaagaagcactaataaactcggatgaaaagaaaacaaacaa-gggaaattgattgccaca 55133197  T
Q  477 -aaacaccggctcgaacaaaaaccccttaaaaacca 511  Q
     ||||| | |||||||||||||||| ||||||||||    
T  55133198 caaacatcagctcgaacaaaaaccctttaaaaacca 55133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 25641263 - 25641407
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 472  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||| ||||||| ||||| || |||    |||||||| | | |||||||||| ||||||    
T  25641263 tttttgaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgc 25641362  T
Q  473 caca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 514  Q
    || |  |||| |||||||||||||||||| ||  |||||||||||    
T  25641363 catactaacatcggctcgaacaaaaacccttttaaaaaaccaccc 25641407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 515
Target Start/End: Original strand, 16662301 - 16662441
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcc--a 474  Q
    |||||||| | |||||| |||||||||||| |||||||||| ||| ||||||| |||||  | ||||||||| |   | ||||| ||||| ||||||  |    
T  16662301 tttttgaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaaa-actaagaagggaaaatctgttgccata 16662399  T
Q  475 caaaacaccggctcgaacaaaaacccc-ttaaaaaccaccct 515  Q
    |||||||| |||||| ||||||||||| ||||||||||||||    
T  16662400 caaaacactggctcgtacaaaaacccctttaaaaaccaccct 16662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 513
Target Start/End: Original strand, 42390766 - 42390906
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcggttgcc 473  Q
    |||||||| |||| |||  |||||  |||| |||||||||||||| | ||||| |||||||| ||||   ||||| ||| | ||||   |||||||||||    
T  42390766 tttttgaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtggagaaaaaaacaaataaaaggaacaatcggttgcc 42390865  T
Q  474 ac-aaaacaccggctcgaacaaaaaccccttaaaaaccacc 513  Q
     | ||||||||||||| ||||||||||||||||||||||||    
T  42390866 gctaaaacaccggctcaaacaaaaaccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 25222278 - 25222218
Alignment:
Q  311 gagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatgtatttataggagct 371  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||    
T  25222278 gagagaaagtgatgttggtgatgtgagagtgagtataaaggtttatttatttataggagct 25222218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 45511396 - 45511440
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaaga 421  Q
    |||||||| | |||||| |||||||||||| ||||||||||||||    
T  45511396 tttttgaatcagcaaaatattattaaccaacaagcccgtgcaaga 45511440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 23172985 - 23173107
Alignment:
Q  395 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaa 491  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||| |||||| ||||||  | |||||||||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggctcgaa 23173084  T
Q  492 caaaaaccccttaaaaaccaccc 514  Q
    ||||| |||||||||||||||||    
T  23173085 caaaacccccttaaaaaccaccc 23173107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 389 - 514
Target Start/End: Complemental strand, 22887337 - 22887211
Alignment:
Q  389 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacacaaggggaaatcggttgccacaaaacaccggct 487  Q
    ||||| |||||||||||| |||||||||| ||||||||||| |||||||| ||| | |||| ||| | ||||| ||||| |||||||||||| || || |    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgggagaaaaaaaatataagggaaaatcagttgccacaaaagacaggtt 22887238  T
Q  488 cgaacaaaaaccccttaaaaaccaccc 514  Q
    | |||||||||||||||||||||||||    
T  22887237 caaacaaaaaccccttaaaaaccaccc 22887211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 389 - 523
Target Start/End: Complemental strand, 25539947 - 25539810
Alignment:
Q  389 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcggttgccacaaaacaccg 484  Q
    ||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| || |||||| |    || ||||| |||||||||||||||  ||||| ||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtgaaaaaaaaacaaaaatacaagaggaaatcggttgccatcaaacatcg 25539849  T
Q  485 gctcgaacaaaaaccccttaaaaaccaccctaacactaa 523  Q
    |||||||||||||||||||||||||||||| || |||||    
T  25539848 gctcgaacaaaaaccccttaaaaaccaccccaaaactaa 25539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 9931791 - 9931935
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-------aaaaaataaacacaaggggaaatcggt 469  Q
    |||||||||||| ||| | ||||||||||| |||||||||||||| ||||||||||||| || |||       |||||||| | || |||||||||||||    
T  9931791 tttttgaaacggtaaata-ttattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgggaagaaaaaaaaatacaaacgaggggaaatcggt 9931889  T
Q  470 tgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    |||| || ||||||| |||||||||||||| ||| |||||||||||    
T  9931890 tgccgcacaaacaccagctcgaacaaaaacacctcaaaaaccaccc 9931935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 388 - 508
Target Start/End: Original strand, 819134 - 819254
Alignment:
Q  388 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggttgccacaaaacaccggc 486  Q
    |||||| ||||||| |||| ||| ||||| |||| ||||||| ||| |||| ||||||||| | || |||| |||||||||||||||||||| ||||  |    
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaataaaacaaagggaaatcggttgccacaaa-caccaac 819232  T
Q  487 tcgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||||||||||||    
T  819233 tcgaacaaaaaccccttaaaaa 819254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 3677784 - 3677924
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcggttgc 472  Q
    |||||||| | |||| | ||||||| |||| |||||| ||| ||||||||||| |||||||| ||||||||| |    || |||||||  ||||||||||    
T  3677784 tttttgaatcagcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtggaaaaaaaacaagaatacaagggacaatcggttgc 3677882  T
Q  473 cacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 514  Q
    | ||| |||| ||||| |||||||||||||||||||||||||    
T  3677883 cgcaatacactggctcaaacaaaaaccccttaaaaaccaccc 3677924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 377 - 508
Target Start/End: Complemental strand, 10431198 - 10431063
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac--acaaggggaaatcggttgcc 473  Q
    |||||||||||| |||| |||||||| ||| || ||||||||||| ||| ||| ||| |||| |||| ||||| ||||  |||||| |||||||||||||    
T  10431198 tttttgaaacggaaaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcggttgcc 10431099  T
Q  474 aca-aaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    ||| |||||||| |||||||||||||| | ||||||    
T  10431098 acacaaacaccgactcgaacaaaaacctcataaaaa 10431063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 377 - 499
Target Start/End: Original strand, 42241583 - 42241708
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat--ggaaaaaataaacacaaggggaaatcggttgcca 474  Q
    ||||| || |||||||| |||||||||||| ||| ||| |||||||||||||| ||||||||||  | |||||||| | | |||||||||||||| ||||    
T  42241583 ttttttaatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatgagaaaaaaatacaaagaaggggaaatcggtcgcca 42241682  T
Q  475 ca-aaacaccggctcgaacaaaaacc 499  Q
     | |||| |||||| |||||||||||    
T  42241683 tacaaactccggcttgaacaaaaacc 42241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 456 - 508
Target Start/End: Complemental strand, 2292222 - 2292168
Alignment:
Q  456 aaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2292222 aaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 2292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 9597748 - 9597800
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 429  Q
    |||||||| |||||||| |||||||||||| ||||| |||||||| |||||||    
T  9597748 tttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaa 9597800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 377 - 508
Target Start/End: Original strand, 33112709 - 33112844
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagc-tcggatggaaaaaataaaca--caaggggaaatcggttgcc 473  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||| | ||  |||||||| |||||  |||||||||||||||||||    
T  33112709 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcggttgcc 33112808  T
Q  474 aca-aaacaccggctcgaacaaaaaccccttaaaaa 508  Q
    | | ||||   |||||||||||||||||||||||||    
T  33112809 atacaaactttggctcgaacaaaaaccccttaaaaa 33112844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 10247049 - 10246910
Alignment:
Q  377 tttttgaaacggcaaaaa-attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccac 475  Q
    ||||| || ||||||||| |||||||||||| |||||||||||||| ||||||| | | || | |||| |||| | | | ||||| |||||||||| |||    
T  10247049 ttttttaatcggcaaaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaacaaagaagggaaaatcggttgtcac 10246950  T
Q  476 aaaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 514  Q
    | |||||||||||||||||||||||| |||||||||||||    
T  10246949 acaacaccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 377 - 602
Target Start/End: Complemental strand, 11546905 - 11546685
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcggttgccac 475  Q
    ||||| ||||||||||| |||||||||  | |||||||||||||  ||||||| |||||||| || ||||||| | | | |||| ||||||||||| ||     
T  11546905 ttttttaaacggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggtgagaaaaaaaacaaagaaggagaaatcggttgtcat 11546806  T
Q  476 a-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatgaca 574  Q
    | |||||||||||||||||||||| |||||||||     ||| | |||| | |  |||||||    |||| | |||||||||||||||||||| ||||||    
T  11546805 acaaacaccggctcgaacaaaaactccttaaaaa----actacccctaaagaaggaactacc---tacaagagtaatgacgcagacatatacatatgaca 11546713  T
Q  575 atccgcaagcatacccctgcatcaacac 602  Q
    |||| || | |||||||||| |||||||    
T  11546712 atcctcatgaatacccctgcgtcaacac 11546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 380 - 515
Target Start/End: Complemental strand, 6575860 - 6575720
Alignment:
Q  380 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccac 475  Q
    ||||| |||||||| |||||||| ||| |||||||||||||| ||||||| ||| |||| |||    |||||||| |||||| || ||||| |||| ||     
T  6575860 ttgaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaagaaaaaaatacacacaaaggaaaatcagttgtcat 6575761  T
Q  476 a-aaacaccggctcgaacaaaaaccccttaaaaaccaccct 515  Q
    | ||||| ||||||||||||||||| |||||||||||||||    
T  6575760 acaaacatcggctcgaacaaaaacctcttaaaaaccaccct 6575720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 15859239 - 15859093
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaaga--agcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaa----ggggaaatcggtt 470  Q
    |||| ||| |||||||| |||||||| ||| |  ||||||||||||  ||||||| |||||||| |||| |||| ||| ||||    |||||||||||||    
T  15859239 ttttagaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaatcggtt 15859140  T
Q  471 gccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 514  Q
    |||| | |||||||||||||||||||||||||||  |||||||||||    
T  15859139 gccaaacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 15859093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 377 - 602
Target Start/End: Complemental strand, 34761300 - 34761080
Alignment:
Q  377 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgcca 474  Q
    |||||||||||||||| | ||||||| | | |||||||||||||  ||||||| |||||||| |||  |||||||| | | |||  ||||||||||| ||    
T  34761300 tttttgaaacggcaaata-ttattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcggttgtca 34761202  T
Q  475 ca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatga 572  Q
     | |||||||| ||||||||||||| |||| |||||||||||     |||| | |  |||||||    |||| | ||||||||||| |||||||| ||||    
T  34761201 tacaaacaccgactcgaacaaaaactccttaaaaaaccaccc-----ctaaagaaggaactacc---tacaacagtaatgacgcaggcatatacatatga 34761110  T
Q  573 caatccgcaagcatacccctgcatcaacac 602  Q
    |||||| || | |||||||||| |||||||    
T  34761109 caatcctcatgaatacccctgcgtcaacac 34761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 33984814 - 33984753
Alignment:
Q  455 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccc 514  Q
    |||||||||||||||||||| | |||||| || ||||||||||||||||| |||||||||||    
T  33984814 caaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccaccc 33984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 429
Target Start/End: Original strand, 12754422 - 12754465
Alignment:
Q  386 cggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 429  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  12754422 cggcaaaaaattattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 12892 - 12947
Alignment:
Q  380 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 435  Q
    |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  12892 ttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 8012 - 7956
Alignment:
Q  373 tttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 429  Q
    ||||||||| || |||||||| |||||||||||| |||||  ||||| |||||||||    
T  8012 tttatttttaaatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaa 7956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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