View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19267_low_61 (Length: 251)

Name: NF19267_low_61
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19267_low_61
NF19267_low_61
[»] scaffold0428 (3 HSPs)
scaffold0428 (18-240)||(2315-2537)
scaffold0428 (16-186)||(15114-15278)
scaffold0428 (61-187)||(13771-13896)
[»] chr6 (10 HSPs)
chr6 (18-240)||(33258194-33258416)
chr6 (18-240)||(33414568-33414788)
chr6 (5-216)||(31564907-31565117)
chr6 (43-240)||(33269541-33269740)
chr6 (120-219)||(33384049-33384148)
chr6 (45-217)||(33395074-33395247)
chr6 (16-186)||(33278975-33279139)
chr6 (29-110)||(33293102-33293183)
chr6 (61-200)||(33406911-33407049)
chr6 (61-187)||(33280357-33280482)
[»] chr2 (1 HSPs)
chr2 (18-219)||(17447760-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 2537 - 2315
Alignment:
Q  18 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  118 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  218 gtagctttttggtccacaggttc 240  Q
    |||||||||||||||||||||||    
T  2337 gtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 15114 - 15278
Alignment:
Q  16 catgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcact 115  Q
    ||||||||| |||||||||| || |  ||||||||||||| ||| ||||| ||||||||||| |  |||  |    |||||||||| |||||||| || |    
T  15114 catgaaaaggcgcaagcataccttag-aaaaagggtctcttatcagctgacaagaaatccggcaagctacta----aaggaagaattggtacata-catt 15207  T
Q  116 cgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatt 186  Q
    | ||||||||||||  |||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  15208 cacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaatt 15278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 13771 - 13896
Alignment:
Q  61 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 160  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 13869  T
Q  161 gactttgttggcagaagtgagaaattt 187  Q
    |||||| ||||||||||||||||||||    
T  13870 gacttttttggcagaagtgagaaattt 13896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33258416 - 33258194
Alignment:
Q  18 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  118 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  218 gtagctttttggtccacaggttc 240  Q
    |||||||||||||||||||||||    
T  33258216 gtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33414788 - 33414568
Alignment:
Q  18 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 117  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| || ||     
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacata-cattca 33414690  T
Q  118 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 217  Q
    |||| |||  |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  33414689 cgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaa 33414590  T
Q  218 gtagctttttggtccacaggttc 240  Q
    || |||  || ||||||||||||    
T  33414589 gttgctgctt-gtccacaggttc 33414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 31564907 - 31565117
Alignment:
Q  5 accaacacttgcatgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcgg 104  Q
    |||||||||| ||||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||||    
T  31564907 accaacacttacatgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgg 31565006  T
Q  105 tacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacga 204  Q
    |||||| || || |||||||| |||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||||||| | ||    
T  31565007 tacata-cattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatga 31565105  T
Q  205 tcttgcaatgca 216  Q
    ||||||||||||    
T  31565106 tcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  43 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatat---cactcgcgattcacacattggtgttcta 139  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||  |||| ||||||||||||||||   || || | || ||  ||| |||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  140 attgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggtt 239  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggtt 33269542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 33384148 - 33384049
Alignment:
Q  120 attcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 219  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 33395247 - 33395074
Alignment:
Q  45 aaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattga 144  Q
    ||||||||||||||| ||||| ||||||||||| || |||||||  |||||||||||||||| ||| || |  |||| ||| |||   |||||| |||||    
T  33395247 aaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaata-cattgacgatgcacgcatctatgttctgattga 33395149  T
Q  145 agtgaacggtgaaaccgactttgttgg--cagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 217  Q
    ||||||| |||||||||||||||||||  ||||||||| | ||| |||||||||||||  |||||| ||||||||    
T  33395148 agtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 33279139 - 33278975
Alignment:
Q  16 catgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcact 115  Q
    ||||||||| |||||||||| || |  ||||||||||||| ||| ||||| ||||||||||| |  |||  |    |||||||||| |||||||| || |    
T  33279139 catgaaaaggcgcaagcataccttag-aaaaagggtctcttatcagctgacaagaaatccggcaagctacta----aaggaagaattggtacata-catt 33279046  T
Q  116 cgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatt 186  Q
    | ||||||||||||  |||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  33279045 cacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaatt 33278975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 33293183 - 33293102
Alignment:
Q  29 aagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacata 110  Q
    ||||||| ||||  |||||||||||||||| |||||||||||||||| | ||||||||||  ||||||||||| ||||||||    
T  33293183 aagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacata 33293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 33407049 - 33406911
Alignment:
Q  61 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 160  Q
    ||||||||||||||| | ||||||||||  || |||| || |||||||||| | |  | ||| |  |||| ||||| |||||| |||||||  |||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatat-attgacaatttatgcattagtgttataattgtagtgaactatgaaacc 33406951  T
Q  161 gactttgttggcagaagtgagaaatttaaggagttggttg 200  Q
    ||||||||||||||||||||| ||||  ||||||||||||    
T  33406950 gactttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 33280482 - 33280357
Alignment:
Q  61 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 160  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 33280384  T
Q  161 gactttgttggcagaagtgagaaattt 187  Q
    |||||| ||||||||||||||||||||    
T  33280383 gacttttttggcagaagtgagaaattt 33280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 17447760 - 17447961
Alignment:
Q  18 tgaaaagccgcaagcatatctcatcaaaaaggg-tctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactc 116  Q
    ||||||| |||||||||| ||||  |||||||| ||||||||||||||||||||||||||| ||||| ||||  |||||||||||||||||||| || ||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacata-cattc 17447858  T
Q  117 gcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgca 216  Q
     |||| ||| ||| |||| |||||||||| |||||  |||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||    
T  17447859 acgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgca 17447958  T
Q  217 agt 219  Q
    |||    
T  17447959 agt 17447961  T

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