View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19267_low_82 (Length: 209)

Name: NF19267_low_82
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19267_low_82
NF19267_low_82
[»] chr5 (14 HSPs)
chr5 (83-191)||(35778998-35779106)
chr5 (16-88)||(35778799-35778871)
chr5 (29-88)||(32379917-32379976)
chr5 (26-80)||(17063886-17063940)
chr5 (35-80)||(1108011-1108056)
chr5 (23-80)||(12779602-12779659)
chr5 (26-81)||(27546084-27546140)
chr5 (26-73)||(41460137-41460184)
chr5 (46-92)||(884483-884529)
chr5 (23-89)||(7144595-7144661)
chr5 (46-80)||(20270612-20270646)
chr5 (23-80)||(12718376-12718433)
chr5 (23-80)||(29765848-29765905)
chr5 (26-70)||(9716696-9716740)
[»] chr4 (35 HSPs)
chr4 (25-80)||(41609675-41609730)
chr4 (27-88)||(8455883-8455944)
chr4 (23-80)||(11012159-11012216)
chr4 (23-80)||(23220353-23220410)
chr4 (23-88)||(5208315-5208380)
chr4 (23-80)||(18568811-18568868)
chr4 (23-88)||(34259833-34259898)
chr4 (23-88)||(35661585-35661650)
chr4 (29-73)||(29384200-29384244)
chr4 (45-81)||(42959312-42959348)
chr4 (23-81)||(5249886-5249945)
chr4 (46-81)||(53796697-53796732)
chr4 (26-89)||(54771487-54771550)
chr4 (23-73)||(8906466-8906516)
chr4 (23-73)||(36444398-36444448)
chr4 (46-93)||(40409147-40409196)
chr4 (27-89)||(44272797-44272859)
chr4 (46-92)||(46634141-46634187)
chr4 (23-80)||(52895245-52895303)
chr4 (46-88)||(56474751-56474793)
chr4 (23-80)||(1987709-1987766)
chr4 (23-80)||(6093603-6093660)
chr4 (48-81)||(27354349-27354382)
chr4 (23-80)||(30042152-30042209)
chr4 (39-80)||(46686267-46686308)
chr4 (23-88)||(55267989-55268054)
chr4 (48-80)||(4949230-4949262)
chr4 (45-81)||(6520826-6520862)
chr4 (46-90)||(12241099-12241143)
chr4 (33-73)||(24337359-24337399)
chr4 (46-90)||(33820322-33820366)
chr4 (40-80)||(34537965-34538005)
chr4 (28-88)||(42510913-42510973)
chr4 (27-95)||(42853961-42854029)
chr4 (46-90)||(44539335-44539379)
[»] chr3 (22 HSPs)
chr3 (23-95)||(27162450-27162522)
chr3 (23-81)||(48405428-48405487)
chr3 (23-88)||(10811153-10811219)
chr3 (22-74)||(30754-30806)
chr3 (46-81)||(28700502-28700537)
chr3 (26-88)||(7202-7264)
chr3 (46-80)||(25806524-25806558)
chr3 (23-81)||(28625275-28625333)
chr3 (23-80)||(622456-622513)
chr3 (23-80)||(2280195-2280252)
chr3 (35-80)||(9557918-9557963)
chr3 (35-88)||(25142658-25142711)
chr3 (23-88)||(36869825-36869890)
chr3 (23-80)||(41717468-41717525)
chr3 (35-80)||(44972732-44972777)
chr3 (37-94)||(45902374-45902431)
chr3 (23-92)||(49761170-49761239)
chr3 (37-78)||(50025696-50025737)
chr3 (25-73)||(1402670-1402718)
chr3 (40-88)||(16267885-16267933)
chr3 (40-80)||(27646533-27646573)
chr3 (46-90)||(30796600-30796644)
[»] chr6 (7 HSPs)
chr6 (23-81)||(17551373-17551432)
chr6 (23-76)||(24881764-24881817)
chr6 (23-89)||(9188931-9188997)
chr6 (27-89)||(12044354-12044416)
chr6 (23-73)||(26094923-26094973)
chr6 (23-88)||(32729907-32729972)
chr6 (46-90)||(32644653-32644697)
[»] chr7 (20 HSPs)
chr7 (23-89)||(13437216-13437282)
chr7 (23-73)||(37392061-37392111)
chr7 (32-94)||(43107637-43107699)
chr7 (23-80)||(41458896-41458953)
chr7 (23-91)||(28109975-28110043)
chr7 (23-78)||(11789689-11789744)
chr7 (46-81)||(38340377-38340412)
chr7 (27-81)||(677770-677824)
chr7 (26-88)||(44187712-44187774)
chr7 (35-80)||(640422-640467)
chr7 (23-80)||(2600530-2600587)
chr7 (28-73)||(18926000-18926045)
chr7 (35-80)||(28548217-28548262)
chr7 (23-80)||(33212060-33212117)
chr7 (35-80)||(37969961-37970006)
chr7 (45-81)||(27163653-27163689)
chr7 (46-94)||(30769643-30769691)
chr7 (46-90)||(34264624-34264668)
chr7 (29-73)||(46651696-46651740)
chr7 (45-81)||(48062097-48062133)
[»] scaffold0003 (1 HSPs)
scaffold0003 (23-88)||(337136-337201)
[»] chr8 (15 HSPs)
chr8 (35-80)||(5742653-5742698)
chr8 (27-88)||(12697701-12697762)
chr8 (40-90)||(29108019-29108069)
chr8 (23-88)||(33605065-33605131)
chr8 (25-70)||(5925075-5925120)
chr8 (23-88)||(6849249-6849314)
chr8 (25-90)||(9314431-9314496)
chr8 (23-80)||(21273706-21273763)
chr8 (33-81)||(32847681-32847730)
chr8 (40-92)||(24798341-24798393)
chr8 (25-73)||(27630917-27630965)
chr8 (40-80)||(32674228-32674268)
chr8 (40-80)||(38939185-38939225)
chr8 (40-92)||(40459746-40459798)
chr8 (46-90)||(45405805-45405849)
[»] chr2 (14 HSPs)
chr2 (23-88)||(3299093-3299158)
chr2 (48-79)||(38464472-38464503)
chr2 (23-81)||(44050033-44050092)
chr2 (23-80)||(546381-546438)
chr2 (23-80)||(7497987-7498044)
chr2 (39-88)||(10060422-10060471)
chr2 (48-81)||(16740181-16740214)
chr2 (23-88)||(36587456-36587521)
chr2 (26-78)||(39213767-39213820)
chr2 (35-80)||(40721801-40721846)
chr2 (40-80)||(13850180-13850220)
chr2 (40-80)||(20247863-20247903)
chr2 (40-80)||(34373040-34373080)
chr2 (23-82)||(40504242-40504302)
[»] chr1 (20 HSPs)
chr1 (23-92)||(12999806-12999875)
chr1 (23-80)||(31184299-31184356)
chr1 (40-93)||(47113309-47113362)
chr1 (40-88)||(29716849-29716897)
chr1 (23-81)||(9566955-9567014)
chr1 (23-81)||(9897556-9897615)
chr1 (23-90)||(18954286-18954353)
chr1 (27-70)||(34395925-34395968)
chr1 (46-80)||(21433396-21433430)
chr1 (23-73)||(23554769-23554819)
chr1 (23-88)||(26839400-26839463)
chr1 (23-73)||(30439268-30439318)
chr1 (46-88)||(40680827-40680869)
chr1 (25-70)||(11097890-11097935)
chr1 (35-80)||(11897204-11897249)
chr1 (46-95)||(25702196-25702245)
chr1 (23-88)||(27352648-27352713)
chr1 (23-80)||(30530570-30530627)
chr1 (23-76)||(49699752-49699805)
chr1 (40-80)||(2827706-2827746)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 35778998 - 35779106
Alignment:
Q  83 ctctctttcttcccttaaaaaatgaatcaataatatatgtttggacgttgtgttaactaaaataaatgaacatggtcgaatatgccttgaaagctggttt 182  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35778998 ctctctctctccccttaaaaaatgaatcaataatatatttttggacgttgtgttaactaaaataaatgaacatggtcgaatatgccttgaaagctggttt 35779097  T
Q  183 tcactcttg 191  Q
    |||||||||    
T  35779098 tcactcttg 35779106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 35778799 - 35778871
Alignment:
Q  16 atgaataaaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||| ||||||| ||||||    
T  35778799 atgaataaaccattttataacaaattttggacaattttatctcttatactcacactatatttttactctctct 35778871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 32379976 - 32379917
Alignment:
Q  29 tttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||||||| |||||||||||||| ||||| |||||||||| ||||| ||| |||||||    
T  32379976 tttatgacaacttttgaacaactttctctctcatactcacatgatgttgttatcctctct 32379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 17063886 - 17063940
Alignment:
Q  26 cattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||||| |||||| |||| ||||||||||||||| ||||||||||||| ||||||    
T  17063886 cattttttgacaacttttaaacaactttatctctcatactcacattatattttta 17063940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 1108011 - 1108056
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||    
T  1108011 acaacttttgtacaactttatctctcatactcacattatgttttta 1108056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 12779659 - 12779602
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| ||| |||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  12779659 aaccaatttgtgacaactttttgacaactttatctctcatactcacattatgttttta 12779602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 27546084 - 27546140
Alignment:
Q  26 cattttatgacaaattttga-acaactttatctcttatactcacattatgtttttac 81  Q
    |||||||||||||||||||  |||||||||| ||| ||||||||||||| |||||||    
T  27546084 cattttatgacaaattttgtgacaactttatttctcatactcacattatatttttac 27546140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 41460137 - 41460184
Alignment:
Q  26 cattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    |||||| |||||| |||| ||||||||||||||| |||||||||||||    
T  41460137 cattttttgacaacttttaaacaactttatctctcatactcacattat 41460184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 884483 - 884529
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctctttct 92  Q
    |||||||||||||| ||||||||||||| |||||||  |||||||||    
T  884483 acaactttatctctcatactcacattatatttttactttctctttct 884529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 7144595 - 7144661
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctt 89  Q
    ||||||||||||| || |||| ||||||||| ||||| ||||||| ||||| || |||| |||||||    
T  7144595 aaccattttatgataacttttaaacaactttctctctcatactcatattatattcttactctctctt 7144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 20270612 - 20270646
Alignment:
Q  46 acaactttatctcttatactcacattatgttttta 80  Q
    |||||||||||||| ||||||||||||||||||||    
T  20270612 acaactttatctctcatactcacattatgttttta 20270646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 12718433 - 12718376
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| ||| |||||| ||||  |||||||||||||| ||| ||||||||||||||||    
T  12718433 aaccaatttgtgacaactttttgacaactttatctctcatattcacattatgttttta 12718376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 29765848 - 29765905
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||||  |||| ||||| |||||||| ||||| | ||||||||||||||||||    
T  29765848 aaccattttagtacaacttttgtacaactttctctctcacactcacattatgttttta 29765905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 9716740 - 9716696
Alignment:
Q  26 cattttatgacaaattttgaacaactttatctcttatactcacat 70  Q
    ||||||||||||| ||||||| || ||| ||||||||||||||||    
T  9716740 cattttatgacaacttttgaataattttctctcttatactcacat 9716696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 41609730 - 41609675
Alignment:
Q  25 ccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  41609730 ccattttatgacaacttttgtacaactttatctctcatactcacattatgttttta 41609675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 8455883 - 8455944
Alignment:
Q  27 attttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||| |||||| |||||||||||||| ||||| ||||||||||||| ||||||| ||||||    
T  8455883 attttgtgacaacttttgaacaactttctctctaatactcacattatatttttactctctct 8455944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 11012159 - 11012216
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||||||||||||||| |||| ||||||||||||||| ||||| ||||||| ||||||    
T  11012159 aaccattttatgacaactttttaacaactttatctctcatacttacattatattttta 11012216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 23220353 - 23220410
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||| |||||| |||| || |||||||||||||||||||||||||| ||||||    
T  23220353 aaccattttttgacaacttttaaataactttatctcttatactcacattatattttta 23220410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 5208380 - 5208315
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||| ||| |||||| ||||| |||||||| ||||| |||||||||||||| ||||| |||||||    
T  5208380 aaccaatttgtgacaacttttgtacaactttctctctcatactcacattatgattttatcctctct 5208315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 18568868 - 18568811
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||| |||||| ||||| |||||||| |||||||||||||||| || ||||||    
T  18568868 aaccattttgtgacaacttttggacaactttttctcttatactcacatgatattttta 18568811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 34259833 - 34259898
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||| |||||| | |||||||||||| ||||| ||||||||||||| || |||| ||||||    
T  34259833 aaccattttgtgacaactgttgaacaactttctctctcatactcacattatcttcttactctctct 34259898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 35661650 - 35661585
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||||||||||||| ||||  |||||  | ||||| |||||||||||||||||||| |||||||    
T  35661650 aaccattttatgacaatttttagacaacactttctctcatactcacattatgtttttatcctctct 35661585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 29384244 - 29384200
Alignment:
Q  29 tttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||    
T  29384244 tttatgacaattttttaacaactttctctcttatactcacattat 29384200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 42959312 - 42959348
Alignment:
Q  45 aacaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||||||||||||||||||||||| |||||||    
T  42959312 aacaactttatctcttatactcacattatttttttac 42959348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 5249886 - 5249945
Alignment:
Q  23 aaccattttatgacaaattttga-acaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||||||||||  ||||  |||||||| ||||| |||||||||||||||||||||    
T  5249886 aaccattttatgacaacatttgtgacaactttctctctcatactcacattatgtttttac 5249945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 53796697 - 53796732
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttac 81  Q
    |||||||||||||||||||||||||||| |||||||    
T  53796697 acaactttatctcttatactcacattatttttttac 53796732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 54771487 - 54771550
Alignment:
Q  26 cattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctt 89  Q
    |||||| ||| || |||||||||| ||| ||||||||||||||||||| ||||||  |||||||    
T  54771487 cattttgtgataacttttgaacaattttctctcttatactcacattatatttttagtctctctt 54771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 8906516 - 8906466
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    ||||| ||| |||||| |||||||||| ||||||||| |||||||||||||    
T  8906516 aaccactttctgacaacttttgaacaattttatctctcatactcacattat 8906466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 36444448 - 36444398
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    ||||||||||||| || |||| ||||||||| ||||| |||||||||||||    
T  36444448 aaccattttatgataactttttaacaactttctctctcatactcacattat 36444398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 40409196 - 40409147
Alignment:
Q  46 acaactttatctcttatactcacattatgttttta--ccctctctttctt 93  Q
    |||||||| ||||| ||||||||||||||||||||  |||||||||||||    
T  40409196 acaactttctctctcatactcacattatgtttttattccctctctttctt 40409147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 44272859 - 44272797
Alignment:
Q  27 attttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctt 89  Q
    ||||| |||||| |||| ||||||||| ||||| ||||||||||||| || |||| |||||||    
T  44272859 attttttgacaacttttaaacaactttctctctcatactcacattatattcttactctctctt 44272797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 46634141 - 46634187
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctctttct 92  Q
    |||||||||||||| ||||||||||||| |||||||  |||||||||    
T  46634141 acaactttatctctcatactcacattatctttttactttctctttct 46634187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 52895245 - 52895303
Alignment:
Q  23 aaccattttatgacaaattttga-acaactttatctcttatactcacattatgttttta 80  Q
    |||||||| ||||||| |||||  |||||||||||||| ||| ||||||||||||||||    
T  52895245 aaccatttcatgacaatttttgtgacaactttatctctcataatcacattatgttttta 52895303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 56474793 - 56474751
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||    
T  56474793 acaattttctctcttatactcacattatgtttttactctctct 56474751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 1987766 - 1987709
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||||  |||| ||||| |||||||| ||||| | ||||||||||||||||||    
T  1987766 aaccattttagtacaatttttgtacaactttctctctcacactcacattatgttttta 1987709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 6093660 - 6093603
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||||  |||| ||||| |||||||| ||||| ||||| ||||||||||||||    
T  6093660 aaccattttaatacaatttttgtacaactttctctctcatacttacattatgttttta 6093603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 27354382 - 27354349
Alignment:
Q  48 aactttatctcttatactcacattatgtttttac 81  Q
    |||||||||||| |||||||||||||||||||||    
T  27354382 aactttatctctcatactcacattatgtttttac 27354349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 30042152 - 30042209
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||| |||||| || | ||||| ||| ||||||||||| ||||||||||||||    
T  30042152 aaccattttgtgacaacttcttaacaattttctctcttatactaacattatgttttta 30042209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 46686267 - 46686308
Alignment:
Q  39 attttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||||| |||||||| ||||| ||||||||||||||||||||    
T  46686267 attttgtacaactttctctctcatactcacattatgttttta 46686308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 55268054 - 55267989
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||| ||| |||||| ||||| |||||||||||||| |||||||||| ||| | ||| |||||||    
T  55268054 aaccaatttgtgacaacttttgtacaactttatctctcatactcacatgatgatcttatcctctct 55267989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 4949262 - 4949230
Alignment:
Q  48 aactttatctcttatactcacattatgttttta 80  Q
    |||||||||||| ||||||||||||||||||||    
T  4949262 aactttatctctcatactcacattatgttttta 4949230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 6520862 - 6520826
Alignment:
Q  45 aacaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  6520862 aacaactttctctctcatactcacattatgtttttac 6520826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 12241099 - 12241143
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||    
T  12241099 acaactttctctctcatactcacattatgtttttattctctcttt 12241143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 24337399 - 24337359
Alignment:
Q  33 tgacaaattttgaacaactttatctcttatactcacattat 73  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  24337399 tgacaactttttaacaactttatctctcatactcacattat 24337359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 33820366 - 33820322
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||    
T  33820366 acaactttctctctcatactcacattatgtttttattctctcttt 33820322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 34537965 - 34538005
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| |||||||| ||||| ||||||||||||||||||||    
T  34537965 ttttgtacaactttctctctcatactcacattatgttttta 34538005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 42510973 - 42510913
Alignment:
Q  28 ttttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||| |||||| |||| ||||| ||| ||||||||||||||||||| || |||| ||||||    
T  42510973 ttttttgacaacttttaaacaattttctctcttatactcacattatattcttactctctct 42510913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 42853961 - 42854029
Alignment:
Q  27 attttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctttcttcc 95  Q
    ||||| |||||| ||||  |||||||| ||| | ||||||||||||| ||||||| |||||| ||||||    
T  42853961 attttttgacaacttttagacaactttctctatcatactcacattatatttttactctctctctcttcc 42854029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 44539335 - 44539379
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    |||||||||||||| ||||||||||||| ||||||  ||||||||    
T  44539335 acaactttatctctcatactcacattatctttttattctctcttt 44539379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 27162522 - 27162450
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctttcttcc 95  Q
    ||||||||| | |||| |||||||||||||| ||||| |||||||||| ||||| ||| ||||||| ||||||    
T  27162522 aaccattttgtaacaacttttgaacaactttctctctcatactcacatgatgttgttatcctctctctcttcc 27162450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 48405428 - 48405487
Alignment:
Q  23 aaccattttatgacaaattttg-aacaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||| |||||| ||||| ||||||||| ||||| |||||||||||||||||||||    
T  48405428 aaccattttgtgacaacttttgtaacaactttctctctcatactcacattatgtttttac 48405487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 10811153 - 10811219
Alignment:
Q  23 aaccattttatgacaaattttga-acaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||||||||||||| |||||  |||||||| ||||| ||||||||||| |||||||||| |||||    
T  10811153 aaccattttatgacaacttttgtgacaactttctctctcatactcacattgtgtttttaccttctct 10811219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 30806 - 30754
Alignment:
Q  22 aaaccattttatgacaaattttgaacaactttatctcttatactcacattatg 74  Q
    ||||||||||||| | | |||||||||| ||||||| ||||||||||||||||    
T  30806 aaaccattttatgtctacttttgaacaattttatcttttatactcacattatg 30754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 28700502 - 28700537
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttac 81  Q
    |||||||||||||| |||||||||||||||||||||    
T  28700502 acaactttatctctcatactcacattatgtttttac 28700537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 7264 - 7202
Alignment:
Q  26 cattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||| |||||| ||||| |||||||| ||||| ||||||||||||| || ||| |||||||    
T  7264 cattttctgacaacttttggacaactttctctctcatactcacattatattcttatcctctct 7202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 25806558 - 25806524
Alignment:
Q  46 acaactttatctcttatactcacattatgttttta 80  Q
    |||||||| ||||||||||||||||||||||||||    
T  25806558 acaactttctctcttatactcacattatgttttta 25806524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 28625333 - 28625275
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||||||| ||   |||||||| ||| ||||| |||||||||||||||||||||    
T  28625333 aaccattttatgataacgcttgaacaattttctctctcatactcacattatgtttttac 28625275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 622513 - 622456
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||||| |||| ||||  |||||||| ||||| ||||||||||||| ||||||    
T  622513 aaccattttattacaactttttgacaactttctctctcatactcacattatattttta 622456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 2280195 - 2280252
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||||  |||| ||||| |||||||| ||||| | ||||||||||||||||||    
T  2280195 aaccattttagtacaacttttgtacaactttctctctcacactcacattatgttttta 2280252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 9557963 - 9557918
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  9557963 acaatttttgtacaactttctctctcatactcacattatgttttta 9557918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 25142658 - 25142711
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||| |||| ||||| |||||||||||||||||||| ||||| ||| |||||||    
T  25142658 acaactttttaacaattttatctcttatactcacatgatgttattatcctctct 25142711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 36869890 - 36869825
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||| |||||| ||||  |||||||| ||||| ||||||||||||| || |||| ||||||    
T  36869890 aaccattttttgacaacttttagacaactttctctctcatactcacattatattcttactctctct 36869825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 41717468 - 41717525
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||||||||||||||| ||||  |||||| | ||| | ||||||||||||||||||||    
T  41717468 aaccattttatgacaactttttgacaactctctctttcatactcacattatgttttta 41717525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 44972732 - 44972777
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||||||||| ||||||||||||| ||||||    
T  44972732 acaacttttgtacaactttatctctcatactcacattatattttta 44972777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 45902431 - 45902374
Alignment:
Q  37 aaattttgaacaactttatctcttatactcacattatgtttttaccctctctttcttc 94  Q
    ||||||||||||| ||||||||| ||||| ||||||| || |||| |||||| |||||    
T  45902431 aaattttgaacaattttatctctcatacttacattatcttcttactctctctctcttc 45902374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 49761239 - 49761170
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctttct 92  Q
    ||||||||| | |||| ||||| |||||||| ||||| | ||||||||||| |||||||  |||||||||    
T  49761239 aaccattttctaacaatttttgtacaactttctctctcacactcacattatatttttactttctctttct 49761170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 50025737 - 50025696
Alignment:
Q  37 aaattttgaacaactttatctcttatactcacattatgtttt 78  Q
    |||||||| |||||||| ||||| ||||||||||||||||||    
T  50025737 aaattttgtacaactttctctctcatactcacattatgtttt 50025696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 1402670 - 1402718
Alignment:
Q  25 ccattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    |||||||||||||| ||||| ||||| || ||||| |||||||||||||    
T  1402670 ccattttatgacaacttttgtacaaccttctctctcatactcacattat 1402718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 16267933 - 16267885
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||||||||||| ||||| ||||||| ||||| || |||||||||||    
T  16267933 ttttgaacaactttctctctcatactcatattatattcttaccctctct 16267885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 27646533 - 27646573
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| |||||||||||||| || |||||||||||||||||    
T  27646533 ttttggacaactttatctctcatgctcacattatgttttta 27646573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 30796644 - 30796600
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||    
T  30796644 acaactttttctctcatactcacattatgtttttattctctcttt 30796600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 17551432 - 17551373
Alignment:
Q  23 aaccattttatgacaaattttg-aacaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||| |||||| ||||| ||||||||| ||||| |||||||||||||||||||||    
T  17551432 aaccattttttgacaacttttgtaacaactttctctctcatactcacattatgtttttac 17551373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 24881817 - 24881764
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtt 76  Q
    |||||||||||||||| |||||||||| ||| ||||||||| |||||| |||||    
T  24881817 aaccattttatgacaacttttgaacaattttctctcttatattcacatgatgtt 24881764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 9188997 - 9188931
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctt 89  Q
    ||||||||| | |||| ||||  |||||||||||||| ||||||||||||| || |||| |||||||    
T  9188997 aaccattttttaacaacttttagacaactttatctctcatactcacattatattcttactctctctt 9188931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 12044354 - 12044416
Alignment:
Q  27 attttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctt 89  Q
    ||||| |||||| ||||  |||||||| ||||| ||||||||||||| ||||||| |||||||    
T  12044354 attttttgacaacttttagacaactttctctctcatactcacattatatttttactctctctt 12044416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 26094923 - 26094973
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    ||||||||| || ||| ||||| |||||||||||||| |||||||||||||    
T  26094923 aaccattttgtggcaatttttgtacaactttatctctcatactcacattat 26094973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 32729907 - 32729972
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||| |||||| ||||  |||||||| ||||| ||||||||||||| || |||| ||||||    
T  32729907 aaccattttctgacaacttttatacaactttctctctcatactcacattatattcttactctctct 32729972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 32644653 - 32644697
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    |||||||| ||||| ||||||||||||| ||||||| ||||||||    
T  32644653 acaactttctctctcatactcacattatatttttactctctcttt 32644697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 13437216 - 13437282
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctt 89  Q
    ||||||||| |||||| |||||||||||||| ||||| ||||||||||| |||| |||  |||||||    
T  13437216 aaccattttgtgacaacttttgaacaactttttctctcatactcacattgtgttcttattctctctt 13437282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 37392061 - 37392111
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    ||||||||| |||||| |||| ||||||||||||||| |||||||||||||    
T  37392061 aaccattttttgacaacttttaaacaactttatctctcatactcacattat 37392111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 43107637 - 43107699
Alignment:
Q  32 atgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctttcttc 94  Q
    ||||||| ||||  |||||||||||||| ||||||||||||| ||||||| |||||| |||||    
T  43107637 atgacaacttttagacaactttatctctcatactcacattatatttttactctctctctcttc 43107699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 41458953 - 41458896
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||||  |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  41458953 aaccattttagtacaatttttgtacaactttctctctcatactcacattatgttttta 41458896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 28109975 - 28110043
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctttc 91  Q
    ||||| ||| |||||| |||| ||||||||||||||  ||||||||||||| ||||||  |||||||||    
T  28109975 aaccactttttgacaacttttaaacaactttatctcacatactcacattatatttttattctctctttc 28110043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 11789744 - 11789689
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttt 78  Q
    ||||||||||  |||| ||||| |||||||| ||||| ||||||||||||||||||    
T  11789744 aaccattttagtacaacttttgtacaactttgtctctcatactcacattatgtttt 11789689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 38340412 - 38340377
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttac 81  Q
    |||||||||||||| |||||||||||||||||||||    
T  38340412 acaactttatctctcatactcacattatgtttttac 38340377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 677824 - 677770
Alignment:
Q  27 attttatgacaaattttgaacaactttatctcttatactcacattatgtttttac 81  Q
    ||||| ||| || |||||||||| ||||||||||||| |||| ||||||||||||    
T  677824 attttttgataacttttgaacaattttatctcttatattcacgttatgtttttac 677770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 44187712 - 44187774
Alignment:
Q  26 cattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||| |||||| |||| ||||||||||| ||| ||||||||||||| || |||| ||||||    
T  44187712 cattttttgacaacttttaaacaactttatttctcatactcacattatattcttactctctct 44187774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 640422 - 640467
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  640422 acaatttttgtacaactttctctctcatactcacattatgttttta 640467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 2600587 - 2600530
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||||  |||| ||||| |||||||| ||||| | ||||||||||||||||||    
T  2600587 aaccattttagtacaacttttgtacaactttttctctcacactcacattatgttttta 2600530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 18926045 - 18926000
Alignment:
Q  28 ttttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    |||| |||||| |||||||||||||| ||||| |||||||||||||    
T  18926045 ttttttgacaacttttgaacaactttctctctcatactcacattat 18926000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 28548262 - 28548217
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  28548262 acaacttttgtacaactttctctctcatactcacattatgttttta 28548217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 33212060 - 33212117
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||| | |||| ||||  |||||||||||||| ||||||||||||| ||||||    
T  33212060 aaccattttctaacaattttttgacaactttatctctcatactcacattatcttttta 33212117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 37969961 - 37970006
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  37969961 acaacttttgtacaactttctctctcatactcacattatgttttta 37970006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 27163689 - 27163653
Alignment:
Q  45 aacaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  27163689 aacaactttctctcttatactcacattatttttttac 27163653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 30769691 - 30769643
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctctttcttc 94  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| |||||    
T  30769691 acaactttatctctcatactcacattatgtatttattctctctctcttc 30769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 34264624 - 34264668
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    ||||||||  |||||||||||||||||||||||||  ||||||||    
T  34264624 acaactttcgctcttatactcacattatgtttttattctctcttt 34264668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 46651696 - 46651740
Alignment:
Q  29 tttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    |||||||||| |||| ||||||||| ||||| |||||||||||||    
T  46651696 tttatgacaattttttaacaactttctctctcatactcacattat 46651740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 48062097 - 48062133
Alignment:
Q  45 aacaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  48062097 aacaactttctctcttatactcatattatgtttttac 48062133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 337136 - 337201
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||| |||||| ||||||| |||||| ||||| ||||||||||||| || |||| ||||||    
T  337136 aaccattttctgacaacttttgaataactttctctctcatactcacattatattcttactctctct 337201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 5742698 - 5742653
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||    
T  5742698 acaacttttgtacaactttatctctcatactcacattatgttttta 5742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 12697762 - 12697701
Alignment:
Q  27 attttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||| || |||||||||||||| ||||| | |||||||||||||| ||||| |||||    
T  12697762 attttatgataatttttgaacaactttctctctcacactcacattatgttcttaccatctct 12697701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 29108019 - 29108069
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    |||| ||||||||| ||| ||||||||||||||| ||||||||| ||||||    
T  29108019 tttttaacaactttctcttttatactcacattatatttttacccgctcttt 29108069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 33605131 - 33605065
Alignment:
Q  23 aaccattttatgacaaattttg-aacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||||||| || ||||| ||||| ||| ||||| ||||||||||| ||||||||| ||||||    
T  33605131 aaccattttatgataacttttggaacaattttctctctcatactcacattgtgtttttactctctct 33605065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 5925075 - 5925120
Alignment:
Q  25 ccattttatgacaaattttgaacaactttatctcttatactcacat 70  Q
    ||||||||| |||| ||||| |||||||||||||| ||||||||||    
T  5925075 ccattttataacaatttttgtacaactttatctctcatactcacat 5925120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 6849314 - 6849249
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||| |||||| ||||  |||||||||||| | ||||||||||||| || |||| ||||||    
T  6849314 aaccattttgtgacaacttttagacaactttatctttcatactcacattatattcttactctctct 6849249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 9314431 - 9314496
Alignment:
Q  25 ccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    |||||||||||||| ||||| ||||| || ||||| ||||||||||  ||||||||  ||||||||    
T  9314431 ccattttatgacaatttttgtacaaccttctctctcatactcacatattgtttttattctctcttt 9314496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 21273763 - 21273706
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||| |||||| || |  |||| ||||||||| ||||||||||||||||||||    
T  21273763 aaccattttgtgacaacttcttgacaattttatctctcatactcacattatgttttta 21273706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 32847730 - 32847681
Alignment:
Q  33 tgacaaattttg-aacaactttatctcttatactcacattatgtttttac 81  Q
    |||||| ||||| ||||||||| ||||||||||||||||||| |||||||    
T  32847730 tgacaacttttgcaacaactttctctcttatactcacattatttttttac 32847681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 24798393 - 24798341
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgtttttaccctctctttct 92  Q
    |||| ||||||||| ||||| ||||||||||||| |||||||  |||||||||    
T  24798393 tttttaacaactttctctctcatactcacattatatttttactttctctttct 24798341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 27630917 - 27630965
Alignment:
Q  25 ccattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    |||||||||||||| ||||  |||||||| ||||| |||||||||||||    
T  27630917 ccattttatgacaattttttgacaactttctctctcatactcacattat 27630965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 32674268 - 32674228
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| |||||||| ||||| ||||||||||||||||||||    
T  32674268 ttttgtacaactttctctctcatactcacattatgttttta 32674228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 38939225 - 38939185
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| |||||||| ||||| ||||||||||||||||||||    
T  38939225 ttttgtacaactttctctctcatactcacattatgttttta 38939185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 40459798 - 40459746
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgtttttaccctctctttct 92  Q
    ||||| |||||||| ||||| ||||||||||||| ||||||  ||||||||||    
T  40459798 ttttgtacaactttctctctcatactcacattatatttttattctctctttct 40459746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 45405849 - 45405805
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||    
T  45405849 acaactttttctctcatactcacattatgtttttattctctcttt 45405805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 3299158 - 3299093
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||||||||||||| |||| ||||||||| | |||||||||||||| ||||  ||| |||||||    
T  3299158 aaccattttatgacaacttttaaacaactttctttcttatactcacatgatgtcgttatcctctct 3299093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 38464472 - 38464503
Alignment:
Q  48 aactttatctcttatactcacattatgttttt 79  Q
    ||||||||||||||||||||||||||||||||    
T  38464472 aactttatctcttatactcacattatgttttt 38464503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 44050033 - 44050092
Alignment:
Q  23 aaccattttatgacaaattttga-acaactttatctcttatactcacattatgtttttac 81  Q
    |||||||||||||||| |||||  ||||| || ||||| |||||||||||||||||||||    
T  44050033 aaccattttatgacaacttttgtgacaaccttctctctcatactcacattatgtttttac 44050092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 546438 - 546381
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| ||||| |||| |||| ||||||||| ||||| ||||||||||||| ||||||    
T  546438 aaccactttattacaactttttaacaactttctctctcatactcacattatattttta 546381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 7498044 - 7497987
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||||| |||| ||||  |||||||| ||||| ||||||||||||| ||||||    
T  7498044 aaccattttattacaactttttgacaactttctctctcatactcacattatattttta 7497987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 10060471 - 10060422
Alignment:
Q  39 attttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||| ||||||||||||||| ||||||| ||||| ||||||| ||||||    
T  10060471 atttttaacaactttatctctcatactcatattatctttttactctctct 10060422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 16740181 - 16740214
Alignment:
Q  48 aactttatctcttatactcacattatgtttttac 81  Q
    |||||||||| |||||||||||||||||||||||    
T  16740181 aactttatctattatactcacattatgtttttac 16740214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 36587521 - 36587456
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||| |||||| ||||  |||||||| ||||| |||||||||||||  |||||| ||||||    
T  36587521 aaccattttttgacaattttttgacaactttctctctcatactcacattatcattttactctctct 36587456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 39213820 - 39213767
Alignment:
Q  26 cattttatgacaaattttg-aacaactttatctcttatactcacattatgtttt 78  Q
    |||||| |||||| ||||| ||||||||||||||| ||||||||||||| ||||    
T  39213820 cattttgtgacaacttttgcaacaactttatctctcatactcacattatttttt 39213767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 40721801 - 40721846
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  40721801 acaacttttgtacaactttctctctcatactcacattatgttttta 40721846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 13850220 - 13850180
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| |||||||| ||||| ||||||||||||||||||||    
T  13850220 ttttgtacaactttctctctcatactcacattatgttttta 13850180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 20247903 - 20247863
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| |||||||| ||||| ||||||||||||||||||||    
T  20247903 ttttgtacaactttctctctcatactcacattatgttttta 20247863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 34373040 - 34373080
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| |||||||| ||||| ||||||||||||||||||||    
T  34373040 ttttgtacaactttctctctcatactcacattatgttttta 34373080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 40504242 - 40504302
Alignment:
Q  23 aaccattttatgacaaattttga-acaactttatctcttatactcacattatgtttttacc 82  Q
    |||||||||||||||| | |||  |||| ||| ||||||||||||||||| ||||||||||    
T  40504242 aaccattttatgacaactgttgtgacaaatttctctcttatactcacattttgtttttacc 40504302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 12999875 - 12999806
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctctttct 92  Q
    ||||||||| | |||| ||||| |||||||| ||||| ||||||||||||| |||||||  |||||||||    
T  12999875 aaccattttctaacaacttttgtacaactttctctctcatactcacattatatttttactttctctttct 12999806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 31184299 - 31184356
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||||||||||||||| |||| ||||||||||||||| || |||| ||||| ||||||    
T  31184299 aaccattttatgacaactttttaacaactttatctctcatgctcaaattatattttta 31184356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 47113309 - 47113362
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgtttttaccctctctttctt 93  Q
    ||||| |||||||| ||||| ||||||||||||||||||||  |||||||||||    
T  47113309 ttttggacaactttctctctcatactcacattatgtttttattctctctttctt 47113362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 29716849 - 29716897
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||| ||||||||||||||||||||||||||||| || ||||| |||||    
T  29716849 tttttaacaactttatctcttatactcacattatattcttaccatctct 29716897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 9567014 - 9566955
Alignment:
Q  23 aaccattttatgacaaattttga-acaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||| |||||| |||||  |||||||| ||||| |||||||||||||||||||||    
T  9567014 aaccattttttgacaacttttgtgacaactttctctctcatactcacattatgtttttac 9566955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 9897615 - 9897556
Alignment:
Q  23 aaccattttatgacaaattttga-acaactttatctcttatactcacattatgtttttac 81  Q
    ||||||||| |||||| |||||  |||||||||||| | |||||||||||||||||||||    
T  9897615 aaccattttttgacaacttttgtgacaactttatctttaatactcacattatgtttttac 9897556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 18954353 - 18954286
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctcttt 90  Q
    ||||||||| |||||| |||| ||||||||||||||| ||| | ||||||| |||||||  |||||||    
T  18954353 aaccattttgtgacaattttttaacaactttatctctcatatttacattatatttttactttctcttt 18954286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 34395968 - 34395925
Alignment:
Q  27 attttatgacaaattttgaacaactttatctcttatactcacat 70  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||    
T  34395968 attttatgacaacttttgaacaactttctctctcatactcacat 34395925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 21433430 - 21433396
Alignment:
Q  46 acaactttatctcttatactcacattatgttttta 80  Q
    |||||||| ||||||||||||||||||||||||||    
T  21433430 acaactttctctcttatactcacattatgttttta 21433396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 23554769 - 23554819
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    ||||||||| ||| || |||| ||||||||||||||| |||||||||||||    
T  23554769 aaccattttttgataatttttaaacaactttatctctcatactcacattat 23554819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 26839400 - 26839463
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||||||| || ||||| |||||||| ||||  ||||||||||||| || |||||||||||    
T  26839400 aaccattttatgataacttttgtacaactttctctc--atactcacattatattcttaccctctct 26839463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 30439268 - 30439318
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattat 73  Q
    ||||| |||||||||| ||||  |||||||||||||| |||||||||||||    
T  30439268 aaccaatttatgacaattttttgacaactttatctctcatactcacattat 30439318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 40680827 - 40680869
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctct 88  Q
    |||||||||| ||| |||||||||||||||||||||| |||||    
T  40680827 acaactttatttctcatactcacattatgtttttaccttctct 40680869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 11097935 - 11097890
Alignment:
Q  25 ccattttatgacaaattttgaacaactttatctcttatactcacat 70  Q
    ||||||| |||||| |||||||||||||| ||||| ||||||||||    
T  11097935 ccattttgtgacaacttttgaacaactttctctctcatactcacat 11097890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 11897204 - 11897249
Alignment:
Q  35 acaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  11897204 acaacttttgtacaactttctctctcatactcacattatgttttta 11897249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 25702245 - 25702196
Alignment:
Q  46 acaactttatctcttatactcacattatgtttttaccctctctttcttcc 95  Q
    |||||||||||||| ||||||||||||| || |||| |||||| ||||||    
T  25702245 acaactttatctctcatactcacattatattcttactctctctctcttcc 25702196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 27352648 - 27352713
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtttttaccctctct 88  Q
    ||||||||| ||| || ||||| |||||||| ||||| ||||||||||||| || |||| ||||||    
T  27352648 aaccattttgtgataacttttggacaactttctctctcatactcacattatattcttactctctct 27352713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 30530627 - 30530570
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||||||| |||||| ||||  |||||||| ||||| ||||||||||||| ||||||    
T  30530627 aaccattttgtgacaacttttagacaactttctctctcatactcacattatattttta 30530570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 49699805 - 49699752
Alignment:
Q  23 aaccattttatgacaaattttgaacaactttatctcttatactcacattatgtt 76  Q
    ||||||||||||| || |||| ||||||||| | |||||||||||||| |||||    
T  49699805 aaccattttatgataattttttaacaactttctttcttatactcacatgatgtt 49699752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 2827746 - 2827706
Alignment:
Q  40 ttttgaacaactttatctcttatactcacattatgttttta 80  Q
    ||||| |||||||| ||||| ||||||||||||||||||||    
T  2827746 ttttgtacaactttctctctcatactcacattatgttttta 2827706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University