View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_high_11 (Length: 470)
Name: NF19268_high_11
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 33355742 - 33355329
Alignment:
| Q |
20 |
gagacatacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355742 |
gagacatacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctc |
33355643 |
T |
|
| Q |
120 |
agataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtcaaatattcattatatacaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355642 |
agataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtcaaatattcattatatacaca |
33355543 |
T |
|
| Q |
220 |
ctctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaacnnnnnnncacattctaatacttactagaaaaatccattggatcatgtta |
319 |
Q |
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| T |
33355542 |
ctctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaactttttttcacattataatacttactagcaaaatccattggatcatgtta |
33355443 |
T |
|
| Q |
320 |
gttagcttaaatgttatgtagcattga--tattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgctcaacaccaacatgatacaaacacat |
417 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
33355442 |
gttagcttaaatgttatgtagcattgatctattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgttcaacatccacatgatacaaacacat |
33355343 |
T |
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| Q |
418 |
gtagttacttttaa |
431 |
Q |
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|||||||| ||||| |
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| T |
33355342 |
gtagttacatttaa |
33355329 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 7217385 - 7217557
Alignment:
| Q |
26 |
tacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctcagataa |
125 |
Q |
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||||||| |||||||| |||||| | | ||| |||| ||||||| ||| ||| |||| |||||| | | ||||| ||||||||||||||||| || | |
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| T |
7217385 |
tacttcagtgactgtctctgcaatgttaatgataacatttcattcacttttggattcatcagtttaatttgttggggtgttgctgaaattcctcaaatta |
7217484 |
T |
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| Q |
126 |
tcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagt |
198 |
Q |
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|||| | |||||| ||||| |||||||| |||| ||| |||||| ||||||||||| || |||||||| |
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| T |
7217485 |
tcactaattttcgtgctaagtctagccatggtgtttctattgtctttcttcttacttgggttgctgggttagt |
7217557 |
T |
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