View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_high_12 (Length: 461)
Name: NF19268_high_12
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_high_12 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 48911633 - 48911227
Alignment:
| Q |
1 |
gtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatt |
100 |
Q |
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| T |
48911633 |
gtggtggtgaagaggggttcgacgccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatt |
48911534 |
T |
|
| Q |
101 |
tgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggcc |
200 |
Q |
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| T |
48911533 |
tgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggcc |
48911434 |
T |
|
| Q |
201 |
aggtgctaagtaaggtatgaagtatatattaagtggtttctcttctccttcttccgtattcatcatctttgccttgtcttctgtgtgtttggatactata |
300 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911433 |
aggtgctaagtaaggtatgaagtagatggtaagtgctttctcttctccttcttccgtattcatcatctttgccttgtcttctgtgtgtttggatactatg |
48911334 |
T |
|
| Q |
301 |
tatgaattagaatgaacgtgatgatgagagaggtattgtactaattaattgtttctgctattgcttttaatgtccaacaatggaga-gatcctaactctg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48911333 |
aatgaattagaatgaacgtgatgatgagagaggtattgtagcaattaactgtttctgctattgcttttaatgtccaacaatggagaggatcctaactctg |
48911234 |
T |
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| Q |
400 |
gttgccc |
406 |
Q |
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| T |
48911233 |
gttgccc |
48911227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 48975036 - 48975193
Alignment:
| Q |
49 |
gaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacatttt |
148 |
Q |
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| T |
48975036 |
gaaggaaatggaacagtatgaaggcggaggtggttgtgagaagggatggatttgagaatgatttgggcattagagggagtggtaatgatggtaacatggt |
48975135 |
T |
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| Q |
149 |
gacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgc |
206 |
Q |
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| T |
48975136 |
gaccgcatgaggcaaagagtgtagcaatgtcgcatagaggggtcatgtggccaggtgc |
48975193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 48952213 - 48952342
Alignment:
| Q |
95 |
tagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcat |
194 |
Q |
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|||||||| |||||||| |||||| || | ||||||||||| || ||| |||| ||| | |||||||||| |||||||| |||| ||||||||| |
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| T |
48952213 |
tagatttgggaaggattttagcatttgaatgagtggttatgattgtaacaaagtgaccacgtgaagcaaagagagaagctatgtcacataaagggatcat |
48952312 |
T |
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| Q |
195 |
gtggccaggtgctaagtaaggtatgaagta |
224 |
Q |
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||| || | ||||||||| || |||||||| |
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| T |
48952313 |
gtgccctgctgctaagtatggaatgaagta |
48952342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 5782 - 5536
Alignment:
| Q |
18 |
ttcgacaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagca |
117 |
Q |
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|||||| ||||| |||||||| ||| | || |||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
5782 |
ttcgacgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagca |
5683 |
T |
|
| Q |
118 |
ttggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggta |
217 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||| ||||||||| || ||||| ||||||||||||| |
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| T |
5682 |
ttggagggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggatcatatgaccaggagctaagtaaggta |
5583 |
T |
|
| Q |
218 |
tgaagtatatattaagtggtttctcttctccttcttccgtattcatc |
264 |
Q |
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||||||| ||| |||||| ||||||||||||||||||| ||| |||| |
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| T |
5582 |
tgaagtagatagtaagtgctttctcttctccttcttccatatccatc |
5536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 9762 - 9553
Alignment:
| Q |
22 |
acaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattgg |
121 |
Q |
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||||| ||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
9762 |
acaccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttgg |
9663 |
T |
|
| Q |
122 |
agggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaa |
221 |
Q |
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| T |
9662 |
aaggtgtggttatgatggtaacattttgacagcgta----------------tatgtcgcatagagggatcatatgaccaggtgataagtaaggtatgaa |
9579 |
T |
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| Q |
222 |
gtatatattaagtggtttctcttctc |
247 |
Q |
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||| || ||||||| ||||||||||| |
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| T |
9578 |
gtagattttaagtgctttctcttctc |
9553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 31742730 - 31742786
Alignment:
| Q |
318 |
gtgatgatgagagaggtattgtactaattaattgtttctgctattgcttttaatgtc |
374 |
Q |
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||||||||||||||| ||||||| |||||||| |||| ||||||||||||| |||| |
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| T |
31742730 |
gtgatgatgagagagttattgtagcaattaattatttccgctattgcttttagtgtc |
31742786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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