View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19268_high_15 (Length: 359)

Name: NF19268_high_15
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19268_high_15
NF19268_high_15
[»] chr8 (13 HSPs)
chr8 (35-279)||(43617286-43617529)
chr8 (276-344)||(30470864-30470932)
chr8 (279-344)||(36912377-36912442)
chr8 (277-344)||(18029545-18029612)
chr8 (279-343)||(26632200-26632264)
chr8 (304-344)||(41477168-41477208)
chr8 (303-344)||(8610027-8610068)
chr8 (279-344)||(34955712-34955776)
chr8 (302-344)||(38584940-38584982)
chr8 (304-344)||(4625540-4625580)
chr8 (272-344)||(35931815-35931887)
chr8 (304-344)||(40283460-40283500)
chr8 (304-344)||(43524437-43524477)
[»] chr2 (6 HSPs)
chr2 (41-279)||(275176-275403)
chr2 (277-344)||(37245461-37245528)
chr2 (304-344)||(17929302-17929342)
chr2 (289-344)||(14152114-14152169)
chr2 (302-344)||(13151531-13151573)
chr2 (304-344)||(17485804-17485844)
[»] chr5 (7 HSPs)
chr5 (279-341)||(41263322-41263384)
chr5 (277-344)||(8176349-8176416)
chr5 (277-344)||(41153052-41153119)
chr5 (279-344)||(37882475-37882540)
chr5 (301-344)||(14278811-14278854)
chr5 (277-335)||(42608099-42608157)
chr5 (304-344)||(39008465-39008505)
[»] chr7 (6 HSPs)
chr7 (277-341)||(37888511-37888575)
chr7 (279-344)||(22737641-22737706)
chr7 (314-344)||(37887843-37887873)
chr7 (279-344)||(22191182-22191246)
chr7 (307-348)||(25218850-25218891)
chr7 (304-344)||(26812099-26812139)
[»] scaffold0100 (1 HSPs)
scaffold0100 (280-344)||(30584-30648)
[»] chr4 (4 HSPs)
chr4 (277-339)||(47750275-47750337)
chr4 (279-344)||(35394877-35394942)
chr4 (301-344)||(34199315-34199358)
chr4 (304-344)||(13094436-13094476)
[»] chr3 (11 HSPs)
chr3 (277-347)||(25832767-25832836)
chr3 (279-344)||(41890497-41890561)
chr3 (279-344)||(46572971-46573036)
chr3 (312-344)||(35424055-35424087)
chr3 (303-347)||(36178747-36178791)
chr3 (304-344)||(42601748-42601788)
chr3 (303-344)||(4045966-4046007)
chr3 (303-344)||(10426477-10426518)
chr3 (303-344)||(35472672-35472713)
chr3 (304-344)||(26165600-26165640)
chr3 (304-344)||(31170271-31170311)
[»] chr1 (6 HSPs)
chr1 (279-344)||(44651032-44651096)
chr1 (304-344)||(41542313-41542353)
chr1 (301-344)||(3755074-3755117)
chr1 (302-344)||(44334270-44334312)
chr1 (307-344)||(8464085-8464122)
chr1 (304-344)||(29523686-29523726)
[»] scaffold0012 (1 HSPs)
scaffold0012 (304-344)||(124001-124041)
[»] chr6 (3 HSPs)
chr6 (310-344)||(197795-197829)
chr6 (301-347)||(8669872-8669918)
chr6 (310-344)||(29428564-29428598)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 35 - 279
Target Start/End: Original strand, 43617286 - 43617529
Alignment:
Q  35 gtctatttataataaaaccctcgctctccattgacaaaa-atcactaccaatttagtacggaagtagcataaaataaaaacaatcctattaaataatctc 133  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43617286 gtctatttataataaaaccctcgctctccattgacaaaaaatcactaccaatttagtacggaagtagcataaaataaaaacaatcctattaaataatctc 43617385  T
Q  134 tataactcatttagattcagtaaaatcagcatcaatcacatccccatctactcccttgcctgatgatgattctgacttcttctgaggggccagactcgct 233  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||    
T  43617386 tataactcatttagagtcagtaaaatcagcatcaatcacatccccatctgctcccttgcctgatgatgattctga---cttctgaggggccagactcgct 43617482  T
Q  234 -accaggtggtgtaggtcctgctgcatctgcagctccaggttggtta 279  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  43617483 aaccaggtggtgtaggtcctgctgcatctgcagctccaggttggtta 43617529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 30470932 - 30470864
Alignment:
Q  276 gttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||    
T  30470932 gttagaccatccccaatggtttacaccattcaacaccattcaagatccattttttcaattcccaacact 30470864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 36912377 - 36912442
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||| || | |||||||||||||||||| ||| |||||||||||||||||||    
T  36912377 agaccatccccaatggttcaacatattcaacaccattcaacacccactttttcaattcccaacact 36912442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 18029612 - 18029545
Alignment:
Q  277 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||| ||||||||| || |||||||||||||||| ||| ||| |||||||||||||||||||    
T  18029612 ttagaccatctccaatggttcaacacattcaacaccattcgacacccactttttcaattcccaacact 18029545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 26632264 - 26632200
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacac 343  Q
    ||||||||| ||||||||||   ||||||||||||||||||| ||| ||||||||||||||||||    
T  26632264 agaccatcctcaatggtttacaccattcaacaccattcaacacccactttttcaattcccaacac 26632200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 41477168 - 41477208
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  41477168 ttcaacaccattcaacatccactttttcaattcccaacact 41477208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 8610068 - 8610027
Alignment:
Q  303 attcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  8610068 attcaacaccattcaacattcactttttcaattcccaacact 8610027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 34955776 - 34955712
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||||    | ||||||||||||||||| ||| |||||||||||||||||||    
T  34955776 agaccatccccaatggtttttttctttcaacaccattcaaca-ccactttttcaattcccaacact 34955712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 38584982 - 38584940
Alignment:
Q  302 cattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  38584982 cattcaacaccattcaacacacactttttcaattcccaacact 38584940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 4625580 - 4625540
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  4625580 ttcaacaccattcaacactcactttttcaattcccaacact 4625540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 35931815 - 35931887
Alignment:
Q  272 gttggttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||   |||||||  || | |||||||| | ||||||||||| |||||||||| ||||||||    
T  35931815 gttggttagaccatttacaatggtaaaacaaattcaacaaccttcaacatccactttttcaatttccaacact 35931887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 40283460 - 40283500
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  40283460 ttcaatacctttcaacatccactttttcaattcccaacact 40283500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 43524477 - 43524437
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  43524477 ttcaatacccttcaacatccactttttcaattcccaacact 43524437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 41 - 279
Target Start/End: Complemental strand, 275403 - 275176
Alignment:
Q  41 ttataataaaaccctcgctctccattgacaaaaatcactaccaatttagtacggaagtagcataaaataaaaacaatcctattaaataatctctataact 140  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||||| |||||||| ||||||||||||||||||    
T  275403 ttataataaaaccctcgctctccattgacaaaaatcactacccatttagcacggaagaagcacataataaaa-caatcctactaaataatctctataact 275305  T
Q  141 catttagattcagtaaaatcagcatcaatcacatccccatctactcccttgcctgatgatgattctgacttcttctgaggggccagactcgctaccaggt 240  Q
    |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||           |||| ||||||||||||||||||||||    
T  275304 catttagagtcagtaaaatcagcatcaatcacatctccatctgctcccttgcctgatgatga----------gtctgtggggccagactcgctaccaggt 275215  T
Q  241 ggtgtaggtcctgctgcatctgcagctccaggttggtta 279  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  275214 ggtgtaggtcctgctgcatctgcagctccgggttggtta 275176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 37245461 - 37245528
Alignment:
Q  277 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||||| || | ||| |||||||||||||| ||| |||||||||||||||||||    
T  37245461 ttagaccatccccaatggttcaacatatttaacaccattcaacacccactttttcaattcccaacact 37245528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 17929342 - 17929302
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  17929342 ttcaatacccttcaacatccattttttcaattcccaacact 17929302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 14152169 - 14152114
Alignment:
Q  289 caatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||| ||  ||||||||| ||||||||| ||| |||||||||||||||||||    
T  14152169 caatggttaaaaccattcaacaacattcaacacccactttttcaattcccaacact 14152114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 13151573 - 13151531
Alignment:
Q  302 cattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||    
T  13151573 cattcaacaacattcaacacccactttttcaattcccaacact 13151531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 17485804 - 17485844
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  17485804 ttcaatacccttcaacatccactttttcaattcccaacact 17485844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 41263322 - 41263384
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaac 341  Q
    |||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  41263322 agaccatccccaatggttcaacacattcaacaccattcaacatccactttttcaattcccaac 41263384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 8176416 - 8176349
Alignment:
Q  277 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||||| || |||||||||| ||||||||| ||| |||||||||||||||||||    
T  8176416 ttagaccatccccaatggttcaacacattcaacatcattcaacacccactttttcaattcccaacact 8176349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 41153119 - 41153052
Alignment:
Q  277 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||||  || || ||||||||||  |||||||||||||||||||||||| |||||||    
T  41153119 ttagaccatccccaattcttaaacacattcaacaatattcaacatccattttttcaattctcaacact 41153052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 37882540 - 37882475
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||  |||||||  || |||||||||| | ||||||| |||||||||||||||||||||||    
T  37882540 agaccatctacaatggtgaaaaacattcaacaacgttcaacacccattttttcaattcccaacact 37882475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 344
Target Start/End: Original strand, 14278811 - 14278854
Alignment:
Q  301 acattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||| || |||||| |||||||||||||||||||||||    
T  14278811 acattcaacaacactcaacacccattttttcaattcccaacact 14278854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 42608157 - 42608099
Alignment:
Q  277 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaatt 335  Q
    ||||||||||  |||||||  || |||||||||| |||||||||||| |||||||||||    
T  42608157 ttagaccatctacaatggtgaaaaacattcaacaacattcaacatccgttttttcaatt 42608099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 39008465 - 39008505
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  39008465 ttcaatacccttcaacatccactttttcaattcccaacact 39008505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 37888511 - 37888575
Alignment:
Q  277 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaac 341  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  37888511 ttagaccatcctcaatggttaaacacattcaacaccattcaacatccactttttcaattcccaac 37888575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 22737706 - 22737641
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||| || | |||||||| ||||||||| ||| |||||||||||||||||||    
T  22737706 agaccatccccaatggttcaacatattcaacagcattcaacacccactttttcaattcccaacact 22737641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 37887843 - 37887873
Alignment:
Q  314 ttcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||||||||||||||||    
T  37887843 ttcaacatccattttttcaattcccaacact 37887873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 22191182 - 22191246
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||| ||||||||    ||||||||||||||||||| ||| |||||||||| ||||||||    
T  22191182 agaccatccctaatggtttttaccattcaacaccattcaaca-ccactttttcaatttccaacact 22191246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 25218891 - 25218850
Alignment:
Q  307 aacaccattcaacatccattttttcaattcccaacacttcat 348  Q
    ||||||||| |||||||| |||||||||| ||||||||||||    
T  25218891 aacaccatttaacatccactttttcaatttccaacacttcat 25218850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 26812099 - 26812139
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  26812099 ttcaatacccttcaacacccattttttcaattcccaacact 26812139  T

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Target: scaffold0100 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 30648 - 30584
Alignment:
Q  280 gaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||| |||||||    
T  30648 gaccatccccaatggttaaacccattcaacaccattcaacatccactttttcaattctcaacact 30584  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 47750337 - 47750275
Alignment:
Q  277 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattccca 339  Q
    |||||| |||||||||||||||   ||||||||||||||||||||||| ||||||||||||||    
T  47750337 ttagacaatccccaatggtttataccattcaacaccattcaacatccactttttcaattccca 47750275  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 35394877 - 35394942
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||| ||| || ||||||||||||||||||||  ||  ||||||||| ||||||||    
T  35394877 agaccatccccaatagttaaacacattcaacaccattcaacacacaccttttcaatttccaacact 35394942  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 34199358 - 34199315
Alignment:
Q  301 acattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||| | ||||||||||| |||||||||||||||||||    
T  34199358 acattcaacaaccttcaacatccactttttcaattcccaacact 34199315  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 13094476 - 13094436
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  13094476 ttcaatacccttcaacacccattttttcaattcccaacact 13094436  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 25832836 - 25832767
Alignment:
Q  277 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacacttca 347  Q
    |||||||||||  ||||||||    ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25832836 ttagaccatccttaatggtttttaccattcaacaccattcaaca-ccactttttcaattcccaacacttca 25832767  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 41890497 - 41890561
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||| |||||||||    |||||||||||||||||||| || |||||||||||||||||||    
T  41890497 agaccatccacaatggttttcaccattcaacaccattcaacat-cactttttcaattcccaacact 41890561  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 46573036 - 46572971
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||  |||||||  || |||||||||| ||||||||| ||| |||||||||||||||||||    
T  46573036 agaccatctacaatggtgaaaaacattcaacaacattcaacacccactttttcaattcccaacact 46572971  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 35424087 - 35424055
Alignment:
Q  312 cattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||||||||||||||||||    
T  35424087 cattcaacatccattttttcaattcccaacact 35424055  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 36178791 - 36178747
Alignment:
Q  303 attcaacaccattcaacatccattttttcaattcccaacacttca 347  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||    
T  36178791 attcaacacccttcaacacccactttttcaattcccaacacttca 36178747  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 42601748 - 42601788
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  42601748 ttcaacaccattcaacacccactttttcaattcccaacact 42601788  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 4045966 - 4046007
Alignment:
Q  303 attcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||| | ||||||||||| |||||||||||||||||||    
T  4045966 attcaacaaccttcaacatccactttttcaattcccaacact 4046007  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 10426518 - 10426477
Alignment:
Q  303 attcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||| | ||||||| |||||||||||||||||||||||    
T  10426518 attcaacaaccttcaacacccattttttcaattcccaacact 10426477  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 35472713 - 35472672
Alignment:
Q  303 attcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||| ||| ||||||||||| |||||||||||||||||||    
T  35472713 attcaatacccttcaacatccactttttcaattcccaacact 35472672  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 26165640 - 26165600
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  26165640 ttcaatacccttcaacatccactttttcaattcccaacact 26165600  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 31170311 - 31170271
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  31170311 ttcaatacccttcaacacccattttttcaattcccaacact 31170271  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 44651032 - 44651096
Alignment:
Q  279 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||||    | ||||||||||||||||| ||| |||||||||||||||||||    
T  44651032 agaccatccccaatggtttttttctttcaacaccattcaaca-ccactttttcaattcccaacact 44651096  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 41542313 - 41542353
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  41542313 ttcaacatcattcaacatccactttttcaattcccaacact 41542353  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 3755117 - 3755074
Alignment:
Q  301 acattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||    
T  3755117 acattcaacaccattcagcatccactttttcaattctcaacact 3755074  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 44334270 - 44334312
Alignment:
Q  302 cattcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||    
T  44334270 cattcaataccattcaacatccactttttcaattctcaacact 44334312  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Original strand, 8464085 - 8464122
Alignment:
Q  307 aacaccattcaacatccattttttcaattcccaacact 344  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  8464085 aacaccattcaacatccactttttcaattctcaacact 8464122  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 29523686 - 29523726
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||| ||||||| ||| |||||||||||||||||||    
T  29523686 ttcaacacccttcaacacccactttttcaattcccaacact 29523726  T

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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 124001 - 124041
Alignment:
Q  304 ttcaacaccattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  124001 ttcaacaccattcaacatccactttttcaatttccaacact 124041  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 197795 - 197829
Alignment:
Q  310 accattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||| |||||||||||||||||||    
T  197795 accattcaacatccactttttcaattcccaacact 197829  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 8669872 - 8669918
Alignment:
Q  301 acattcaacaccattcaacatccattttttcaattcccaacacttca 347  Q
    |||||||||| | ||||||||||| |||||||||| |||||||||||    
T  8669872 acattcaacaaccttcaacatccactttttcaatttccaacacttca 8669918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 29428598 - 29428564
Alignment:
Q  310 accattcaacatccattttttcaattcccaacact 344  Q
    ||||||||||||||| |||||||||||||||||||    
T  29428598 accattcaacatccactttttcaattcccaacact 29428564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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