View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_high_16 (Length: 343)
Name: NF19268_high_16
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 11113916 - 11113599
Alignment:
| Q |
1 |
tcagtgttcaattgattgatacacctaaaacctactcagacaacttattgatgtaataatccttcatttcattcctacataaaactcttgatcgtaaatt |
100 |
Q |
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| T |
11113916 |
tcagtgttcaattgattgatacacctaaaacctactcagacaacttattgatgtaataacccttcatttcattcctacatgaaactcttgatcgtaaatt |
11113817 |
T |
|
| Q |
101 |
atcatttggtacctgacctgctagaagccaagcaactcaatgtttctctcatgcaacaagtcaccaactagcagacctcccgactaaaccattttcttcc |
200 |
Q |
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| T |
11113816 |
atcatttggcacgtgacctgctagcagccaagcaactcaatgtttctctcatgcaacaagtcaccaattggcagacctcccgactaaaccattttcttcc |
11113717 |
T |
|
| Q |
201 |
tcgcaccataatttcgtaaaatgctcattactaggtcgactgacaaacctgcacaacaatcccacaacataggcactgtcgaatctaatgcaatcagtga |
300 |
Q |
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| T |
11113716 |
tcgaaccataatttcgtaaaatgctcattactaggtcaactgacaaacctgcacaacaatcccacaacataggcactgttgaatctaatgcaatcagtga |
11113617 |
T |
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| Q |
301 |
catatatgaagctgccga |
318 |
Q |
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|||| ||||||||||||| |
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| T |
11113616 |
catacatgaagctgccga |
11113599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 40836040 - 40836092
Alignment:
| Q |
221 |
atgctcattactaggtcgactgacaaacctgcacaacaatcccacaacatagg |
273 |
Q |
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| T |
40836040 |
atgctcattagtaggtctactgacaaacctgcacaacaaccctacaacatagg |
40836092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 8718304 - 8718217
Alignment:
| Q |
227 |
attactaggtcgactgacaaacctgcacaacaatcccacaacataggcactgtcgaatctaatgcaatcagtgacatatatgaagctg |
314 |
Q |
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|||| |||||| |||||||||||||||||||| |||||| || ||| || ||||| |||| |||||||| ||||||| |||| |||| |
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| T |
8718304 |
attattaggtctactgacaaacctgcacaacattcccacgacctagtcaatgtcgggtctagtgcaatcaatgacatacatgaggctg |
8718217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 4540309 - 4540265
Alignment:
| Q |
220 |
aatgctcattactaggtcgactgacaaacctgcacaacaatccca |
264 |
Q |
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| T |
4540309 |
aatgctcattactaggtctatcgacaaacctgcacaacattccca |
4540265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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