View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_high_18 (Length: 255)
Name: NF19268_high_18
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3294312 - 3294071
Alignment:
| Q |
1 |
aagtcatggcaacaaaaactaaaatcttgtttgtcatggaatatgcacgtggtggcgaattattcgagaaggtagcaaaaggtaaatttaaggaagaact |
100 |
Q |
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| T |
3294312 |
aagtcatggcaacaaaaaccaaaatcctgtttgtcatggaatatgcacgtggcggcgaattattcgagaaggtagcaaaaggtaaatttaaggaagaact |
3294213 |
T |
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| Q |
101 |
tgcaagaaagtacttccaacagcttataagtgctgtagattattgtcatagtagaggtgtttctcatcgtgatttaaaaccggagaatttattactcgat |
200 |
Q |
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| T |
3294212 |
tgcaagaaagtacttccaacagcttataagtgctgtagattattgccatagtagaggtgtttctcatcgtgatttaaaaccggagaatttattactcgat |
3294113 |
T |
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| Q |
201 |
gaaaacgagaatcttaaagtctccgattttggtctctctgct |
242 |
Q |
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| T |
3294112 |
gaaaacgagaatcttaaagtctccgattttggtctctctgct |
3294071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 881081 - 880912
Alignment:
| Q |
69 |
aaggtagcaaaaggtaaatttaaggaagaacttgcaagaaagtacttccaacagcttataagtgctgtagattattgtcatagtagaggtgtttctcatc |
168 |
Q |
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| T |
881081 |
aaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtactttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatc |
880982 |
T |
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| Q |
169 |
gtgatttaaaaccggagaatttattactcgatgaaaacgagaatcttaaagtctccgattttggtctctc |
238 |
Q |
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| T |
880981 |
gcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttggactctc |
880912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 9995146 - 9995094
Alignment:
| Q |
129 |
agtgctgtagattattgtcatagtagaggtgtttctcatcgtgatttaaaacc |
181 |
Q |
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| T |
9995146 |
agtgctgttgattactgtcatagtagaggtgtttgtcatcgtgatttgaaacc |
9995094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 22370112 - 22370052
Alignment:
| Q |
102 |
gcaagaaagtacttccaacagcttataagtgctgtagattattgtcatagtagaggtgttt |
162 |
Q |
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| T |
22370112 |
gcaagaaaatattttcagcagcttatatgtgctgtggattactgtcacagtagaggtgttt |
22370052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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