View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19268_high_2 (Length: 715)
Name: NF19268_high_2
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 62 - 698
Target Start/End: Complemental strand, 43019362 - 43018730
Alignment:
| Q |
62 |
agataatagttttaaaatggtgaattctatatatggtgaggtatttaataagtcctttgtcggtgaaccacgtaaacaacgattaaaatcctttagatta |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019362 |
agataatagttttaaaatggtgaattctatatatggtgaggtatttaataagtcctttgtcggtgaaccacgtaaacaacgattaaaatcctttagatta |
43019263 |
T |
|
| Q |
162 |
attcatcatatcatttatttgagatcattatttagcacaatcataccagaggtagagtattaggctagtgaatannnnnnnnctggtggaaactaataaa |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43019262 |
atttatcatatcatttatttgagatcattatttagcacaatcataccagaggtagagtattaggctagtgaatatattttt-ctggtggaaactaataaa |
43019164 |
T |
|
| Q |
262 |
tatgctgtgttggaatattcaagnnnnnnnnnnnnataatatacatgatacaaaacctgacataaaaaaggacatctaacaaaaaggagataaattgact |
361 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019163 |
tatgctgtgttggaatattcaagttttttttt---ataatatacatgatacaaaatctgacataaaaaaggacatctaacaaaaaggagataaattgact |
43019067 |
T |
|
| Q |
362 |
ttacaagctcattacaaaaaataccatcagagtcaactataacactcctaaaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagag |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019066 |
ttacaagctcattacaaaaaataccatcagagtcaactataacactcctaaaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagag |
43018967 |
T |
|
| Q |
462 |
aatacattcaccttaagatgagaccaaaactcacaccctttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaag |
561 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43018966 |
aatacattcaccttgagatgagatcaaaactcacaccctttacaagaagttgcataatttcttctgacctctcttccaccatactaactctcatatgaag |
43018867 |
T |
|
| Q |
562 |
gaaagtatagcgtatgacattgcatataactttaagggacgtttgtttaacctctacaaattaaattcctaaaaatctaagttgtaaactctctattgga |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43018866 |
gaaagtatagcgtatgacattgcatataactttaagggacgtttgtttaacctctacaaattaaattcctaaaaatctaagttgtaaactctctattgga |
43018767 |
T |
|
| Q |
662 |
atgtatatatatatcaattgtaaactctattcaacca |
698 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43018766 |
atgtatatatatatcaattgtaaactatattcaacca |
43018730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43019422 - 43019381
Alignment:
| Q |
1 |
tagcttaaattagtagtttagagttcagactcggtacaaaac |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019422 |
tagcttaaattagtagtttagagttcagactcggtacaaaac |
43019381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 564
Target Start/End: Original strand, 30599806 - 30599978
Alignment:
| Q |
394 |
tcaactataacactccta-aaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcaccttaagatgagaccaaaa-- |
490 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||||||| |||| | | |||||| |||| || ||||| ||||||||||| |||||||| || | |
|
|
| T |
30599806 |
tcaactataactctccttcaaaagagattatgccgagtcacaatcatattctgaagcagttgacatgagaaaacattcaccttgagatgagatgaagatt |
30599905 |
T |
|
| Q |
491 |
ctcacaccctttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaa |
564 |
Q |
| |
|
||||||||| || ||| |||||||| ||||| || |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
30599906 |
ctcacaccc-ttgcaataagttgcacaattttttatgaccttttgtccaccacactaactctcatgtgaaggaa |
30599978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 564
Target Start/End: Complemental strand, 6035325 - 6035211
Alignment:
| Q |
451 |
gttgtcaagagaatacattcaccttaagatgagaccaaaactcacac-cctttacaagaagttgcataatttcttctgacctcacttccaccatactaac |
549 |
Q |
| |
|
|||| |||||||| || |||||||| ||| |||||||| |||| || ||||| |||||| ||||||||||| |||||||||| |||||| |||| | |
|
|
| T |
6035325 |
gttgccaagagaaaactttcaccttgagaagagaccaagactcccaaacctttgaaagaagctgcataatttcatctgacctcatatccacctcactagc |
6035226 |
T |
|
| Q |
550 |
tctcatatgaaggaa |
564 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
6035225 |
tctcttataaaggaa |
6035211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 505 - 571
Target Start/End: Complemental strand, 12759965 - 12759899
Alignment:
| Q |
505 |
aagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaaagtatag |
571 |
Q |
| |
|
||||||| ||| |||||||||||||||| | ||||||| |||| ||||||||| ||||||| ||||| |
|
|
| T |
12759965 |
aagaagtcgcacaatttcttctgacctctcatccaccacactagctctcatattaaggaaattatag |
12759899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 564
Target Start/End: Complemental strand, 13956784 - 13956593
Alignment:
| Q |
375 |
acaaaaaataccatcagagtcaactataacactccta-aaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcacc |
473 |
Q |
| |
|
|||| |||||||| ||| |||||||||| ||||| |||||||||| || |||||| |||| | || |||| | | || |||||||| ||||||||| |
|
|
| T |
13956784 |
acaagaaataccaccaggatcaactataattctccttgaaaagagattctggcgagtcggaatcgtatcctgaatcagctggcaagagaaaacattcacc |
13956685 |
T |
|
| Q |
474 |
ttaagatgagaccaaaactcacaccct-ttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaa |
564 |
Q |
| |
|
|| || ||||||| |||| ||| || || ||||||| |||| || |||||||||| |||| ||| ||| |||| |||| ||||||||||| |
|
|
| T |
13956684 |
ttgcgaggagaccacgactctcacactcttgcaagaagctgcacaaattcttctgacttcacatcccccacactagctcttatatgaaggaa |
13956593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 13005758 - 13005720
Alignment:
| Q |
308 |
gatacaaaacctgacataaaaaaggacatctaacaaaaa |
346 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
13005758 |
gataccaaacctgacttaaaaaaggacatctaacaaaaa |
13005720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University