View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19268_high_22 (Length: 204)

Name: NF19268_high_22
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19268_high_22
NF19268_high_22
[»] chr3 (6 HSPs)
chr3 (16-64)||(37278535-37278583)
chr3 (19-63)||(39948609-39948653)
chr3 (19-64)||(35966325-35966370)
chr3 (16-64)||(4659619-4659667)
chr3 (20-64)||(35359801-35359845)
chr3 (27-63)||(45521067-45521103)
[»] scaffold0160 (1 HSPs)
scaffold0160 (16-63)||(22163-22210)
[»] chr2 (18 HSPs)
chr2 (16-63)||(18741398-18741445)
chr2 (16-64)||(637045-637093)
chr2 (16-64)||(22999156-22999204)
chr2 (16-64)||(31671245-31671293)
chr2 (16-64)||(39417523-39417571)
chr2 (17-64)||(5618476-5618523)
chr2 (25-60)||(19954903-19954938)
chr2 (23-64)||(25994653-25994694)
chr2 (18-63)||(29360631-29360676)
chr2 (16-64)||(816427-816475)
chr2 (20-64)||(15488833-15488877)
chr2 (19-63)||(18055942-18055986)
chr2 (20-64)||(18999413-18999457)
chr2 (27-63)||(19832241-19832277)
chr2 (16-64)||(22382332-22382380)
chr2 (16-64)||(22914358-22914406)
chr2 (16-64)||(32517817-32517865)
chr2 (20-64)||(43461334-43461378)
[»] chr1 (9 HSPs)
chr1 (16-63)||(19596656-19596703)
chr1 (25-64)||(16867399-16867438)
chr1 (23-64)||(236656-236697)
chr1 (16-64)||(44836117-44836165)
chr1 (17-63)||(50905516-50905562)
chr1 (16-61)||(37315056-37315101)
chr1 (20-64)||(13018157-13018201)
chr1 (16-64)||(37186816-37186864)
chr1 (20-64)||(49948325-49948369)
[»] chr7 (7 HSPs)
chr7 (16-64)||(45957333-45957381)
chr7 (17-64)||(8059927-8059974)
chr7 (103-191)||(8059989-8060076)
chr7 (19-64)||(12961823-12961868)
chr7 (20-64)||(2228080-2228124)
chr7 (20-64)||(16862472-16862516)
chr7 (31-63)||(37938064-37938096)
[»] chr4 (13 HSPs)
chr4 (16-63)||(37340108-37340155)
chr4 (16-64)||(32057723-32057771)
chr4 (16-64)||(37759510-37759558)
chr4 (25-63)||(46343419-46343457)
chr4 (23-64)||(7413179-7413220)
chr4 (23-64)||(7459259-7459300)
chr4 (23-60)||(29974394-29974431)
chr4 (17-62)||(33530301-33530346)
chr4 (31-64)||(40597558-40597591)
chr4 (20-64)||(11371060-11371104)
chr4 (20-64)||(47462036-47462080)
chr4 (16-64)||(50981729-50981777)
chr4 (20-64)||(54864480-54864524)
[»] chr8 (10 HSPs)
chr8 (23-64)||(15589255-15589296)
chr8 (20-64)||(33540237-33540281)
chr8 (16-63)||(32778579-32778626)
chr8 (20-61)||(10286468-10286509)
chr8 (20-64)||(3673843-3673887)
chr8 (19-63)||(5917365-5917409)
chr8 (16-64)||(18641515-18641563)
chr8 (20-64)||(20662606-20662650)
chr8 (19-63)||(34642438-34642482)
chr8 (20-64)||(36586566-36586610)
[»] chr5 (8 HSPs)
chr5 (16-64)||(6525920-6525968)
chr5 (16-63)||(10083929-10083976)
chr5 (20-64)||(972594-972638)
chr5 (20-64)||(1277522-1277566)
chr5 (20-64)||(23219114-23219158)
chr5 (16-64)||(24406644-24406692)
chr5 (20-64)||(26310748-26310792)
chr5 (20-64)||(40596040-40596084)
[»] chr6 (2 HSPs)
chr6 (15-63)||(19225846-19225894)
chr6 (20-64)||(24571617-24571661)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37278583 - 37278535
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37278583 cactttgtatgtgtgagtttatgatgactttgtcatctcgtctatctac 37278535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 39948609 - 39948653
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  39948609 tttgtatgtgtgagtttatgatgactttgtcatctcgtctatcta 39948653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 35966325 - 35966370
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  35966325 tttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 35966370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 4659619 - 4659667
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| | ||||| ||||||| |||||||| |||||||||||||||||    
T  4659619 cactttatgtgtgtgagtttataatgactttttcatctcgtctatctac 4659667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 35359801 - 35359845
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  35359801 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 35359845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 45521103 - 45521067
Alignment:
Q  27 tgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  45521103 tgttagtttataatgactttgtcatttcgtctatcta 45521067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 22163 - 22210
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  22163 cactttgtgtgtgtgagtttatgatgactttgtcatctcgtctatcta 22210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 18741445 - 18741398
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  18741445 cactttgtgtgtgtgagtttatgatgactttgtcatctcgtctatcta 18741398  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 637045 - 637093
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  637045 cactttgtgtgtgtgagtttatgatgattttgccatctcgtctatctac 637093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 22999156 - 22999204
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||  |||||||||||||||||||||    
T  22999156 cactttgtgtgtgtgagtttatgatggttttgtcatctcgtctatctac 22999204  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 31671245 - 31671293
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| ||||||| ||||||||||||||||| | ||||||||||||||    
T  31671245 cactttatatgtgtgagtttatgatgactttgccgtctcgtctatctac 31671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 39417523 - 39417571
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| | ||||| |||||||||||||||| |||||||||||||||||    
T  39417523 cactttatgtgtgtgagtttatgatgactttatcatctcgtctatctac 39417571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 5618476 - 5618523
Alignment:
Q  17 actttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| || || |||||||||||||||||||||||||| |||||||    
T  5618476 actttgtgtgcgtgagtttatgatgactttgtcatctcgtttatctac 5618523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 19954938 - 19954903
Alignment:
Q  25 tgtgttagtttatgatgactttgtcatctcgtctat 60  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19954938 tgtgtgagtttatgatgactttgtcatctcgtctat 19954903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 25994694 - 25994653
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| |||||||||||||||| ||||||||| |||||||    
T  25994694 tatgtgtgagtttatgatgactttatcatctcgtttatctac 25994653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 29360676 - 29360631
Alignment:
Q  18 ctttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||| ||||||||||| ||||| |||||||||||||||    
T  29360676 ctttgtatatgtgagtttatgatggctttgccatctcgtctatcta 29360631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 816427 - 816475
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||  |||| ||||||||||||||||    
T  816427 cactttgtgtgtgtgagtttatgatggttttgccatctcgtctatctac 816475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 15488833 - 15488877
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  15488833 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 15488877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 18055942 - 18055986
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  18055942 tttgtgtgtgtgagtttataatgactttgtcatttcgtctatcta 18055986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 18999413 - 18999457
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  18999413 ttgtgtgtgtgagtttattatgactttgtcatttcgtctatctac 18999457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 19832241 - 19832277
Alignment:
Q  27 tgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  19832241 tgttagtttataatgactttgtcatttcgtctatcta 19832277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 22382380 - 22382332
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| | ||| |||||||||||  |||||||||||||||||||||    
T  22382380 cactttgtgtatgtgagtttatgatggttttgtcatctcgtctatctac 22382332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 22914406 - 22914358
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| | ||| |||||||||||  |||||||||||||||||||||    
T  22914406 cactttgtgtatgtgagtttatgatggttttgtcatctcgtctatctac 22914358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32517865 - 32517817
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| ||||||||||||||||| |||||  |||||||||    
T  32517865 cactttgtgtgtgtgagtttatgatgactttgccatcttatctatctac 32517817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 43461378 - 43461334
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  43461378 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 43461334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 19596703 - 19596656
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  19596703 cactttgtatgtgttagtttacgatgactttgccatctcgtctatcta 19596656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 16867438 - 16867399
Alignment:
Q  25 tgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  16867438 tgtgtgagtttatgatgactttgtcatctcgtctatctac 16867399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 236656 - 236697
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| ||||||||||||||||||||||| ||||||||||    
T  236656 tatgtgtgagtttatgatgactttgtcatcttgtctatctac 236697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 44836165 - 44836117
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| ||||||| ||||||||||| |||||||||||| |||||||||    
T  44836165 cactttatatgtgtgagtttatgatggctttgtcatctcatctatctac 44836117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 50905516 - 50905562
Alignment:
Q  17 actttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||| ||||| ||||||| |||||||||||||||||| ||||||    
T  50905516 actttgtgtgtgtgagtttataatgactttgtcatctcgtttatcta 50905562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 37315101 - 37315056
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatc 61  Q
    |||||||| ||||| ||||| || ||||||||||||||||||||||    
T  37315101 cactttgtgtgtgtgagtttgtgttgactttgtcatctcgtctatc 37315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 13018157 - 13018201
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||| ||| ||||||||| ||||||||||||    
T  13018157 ttgtatgtgtcagtttataatggctttgtcatttcgtctatctac 13018201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37186864 - 37186816
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||| | ||||||||||| |||||||||||| |||||||||    
T  37186864 cactttgtgtgtttgagtttatgatggctttgtcatctcttctatctac 37186816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 49948325 - 49948369
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  49948325 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 49948369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 45957381 - 45957333
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  45957381 cactttgtgtgtgttagtttatgaagactttgtcatctcttctatctac 45957333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 8059927 - 8059974
Alignment:
Q  17 actttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  8059927 actttgtatgtgtgagtttgtcatgactttgtcatctcgtctatctac 8059974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 8059989 - 8060076
Alignment:
Q  103 tattctgttatattacaaatttatctatannnnnnnccaacaattgtaaaatttctccttccagcatgcttgtgccttgaccctatgct 191  Q
    ||||| |||||||||||||||||||||||       || ||||  ||||||| |||||||||| |||||||||||||||||||| ||||    
T  8059989 tattcagttatattacaaatttatctatatttttttcctacaac-gtaaaatctctccttccaacatgcttgtgccttgaccctctgct 8060076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 12961868 - 12961823
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||    
T  12961868 tttgtgtgtgtgagtttatgatgactttgtcatctcttctatctac 12961823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 2228124 - 2228080
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  2228124 ttgtatgtgtgagtttataatgactttgtcatttcgtctatctac 2228080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 16862472 - 16862516
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||||||||||||||||| ||| ||||||||    
T  16862472 ttgtgtgtgtgagtttatgatgactttgtcatttcgcctatctac 16862516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 37938096 - 37938064
Alignment:
Q  31 agtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||||||||||||||||||||| ||||||    
T  37938096 agtttatgatgactttgtcatctcgtttatcta 37938064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 37340155 - 37340108
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  37340155 cactttgtgtgtgtgagtttatgatgattttgtcatctcgtctatcta 37340108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32057771 - 32057723
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||  |||||||||||||||||||||    
T  32057771 cactttgtgtgtgtgagtttatgatggttttgtcatctcgtctatctac 32057723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 37759510 - 37759558
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| ||||||||||| |||||||||||| |||||||||    
T  37759510 cactttgtgtgtgtgagtttatgatggctttgtcatctcttctatctac 37759558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 46343419 - 46343457
Alignment:
Q  25 tgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  46343419 tgtgtgagtttatgatgactttgtcatctcttctatcta 46343457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 7413179 - 7413220
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||    
T  7413179 tatgtgtgagtttataatgactttgtcatttcgtctatctac 7413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 7459259 - 7459300
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||    
T  7459259 tatgtgtgagtttataatgactttgtcatttcgtctatctac 7459300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 29974431 - 29974394
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctat 60  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  29974431 tatgtgtgagtttataatgactttgtcatctcgtctat 29974394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 33530301 - 33530346
Alignment:
Q  17 actttgtatgtgttagtttatgatgactttgtcatctcgtctatct 62  Q
    ||||||| ||||| |||||||||| ||||| |||||||||||||||    
T  33530301 actttgtgtgtgtgagtttatgataactttttcatctcgtctatct 33530346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 40597558 - 40597591
Alignment:
Q  31 agtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||||| |||||||||||||||||||||    
T  40597558 agtttatgatgattttgtcatctcgtctatctac 40597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 11371104 - 11371060
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||| ||||||||| ||| ||||||||||||    
T  11371104 ttgtatgtgtgagtttataatgactttgccatttcgtctatctac 11371060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 47462080 - 47462036
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  47462080 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 47462036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 50981777 - 50981729
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| ||||||||||| ||||| |||||| |||||||||    
T  50981777 cactttgtgtgtgtgagtttatgatggctttgacatctcttctatctac 50981729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 54864480 - 54864524
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  54864480 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 54864524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 15589296 - 15589255
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  15589296 tatgtgtgagtttatgatgaatttgtcatctcgtctatctac 15589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 33540237 - 33540281
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||    
T  33540237 ttgtatgtgtgagtttatgatggctttgccatctcgtctatctac 33540281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 32778579 - 32778626
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| |||||  |||||||||| |||||||||||||||||||||    
T  32778579 cactttgtgtgtgtgggtttatgatggctttgtcatctcgtctatcta 32778626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 10286509 - 10286468
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatc 61  Q
    |||||||||| ||||||| ||||||||||||| |||||||||    
T  10286509 ttgtatgtgtgagtttataatgactttgtcatttcgtctatc 10286468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 3673887 - 3673843
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  3673887 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 3673843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 5917365 - 5917409
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  5917365 tttgtgtgtgtgagtttataatgactttgtcatttcgtctatcta 5917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 18641515 - 18641563
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| | |||||||||||||| | ||||||||||||| |||||||||    
T  18641515 cactttatgtgtgttagtttatggtaactttgtcatctcatctatctac 18641563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 20662606 - 20662650
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  20662606 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 20662650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 34642482 - 34642438
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  34642482 tttgtgtgtgtgagtttataatgactttgtcatttcgtctatcta 34642438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 36586566 - 36586610
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||| ||| ||||||||| ||||||||||||    
T  36586566 ttgtatgtgtgagtttataatggctttgtcatttcgtctatctac 36586610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 6525920 - 6525968
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||||||||||||||| |||| ||||    
T  6525920 cactttgtgtgtgtgagtttatgatgactttgtcatctcttctagctac 6525968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 10083976 - 10083929
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||||| ||||||||||||||||| | |||||||||||||    
T  10083976 cactttgtgtgtgtaagtttatgatgactttgccctctcgtctatcta 10083929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 972638 - 972594
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  972638 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 972594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 1277522 - 1277566
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  1277522 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 1277566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 23219158 - 23219114
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  23219158 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 23219114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24406644 - 24406692
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| |||||  |||||||||| ||||| ||||||||||||||||    
T  24406644 cactttgtgtgtgtatgtttatgatggctttgccatctcgtctatctac 24406692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 26310792 - 26310748
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  26310792 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 26310748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 40596040 - 40596084
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  40596040 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 40596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 19225846 - 19225894
Alignment:
Q  15 tcactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||| ||||||| |||||||||||| |||  |||||||||||||||    
T  19225846 tcactttatatgtgtgagtttatgatgattttaccatctcgtctatcta 19225894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 24571661 - 24571617
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  24571661 ttgtgtgtgtaagtttataatgactttgtcatttcgtctatctac 24571617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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