View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19268_high_23 (Length: 203)
Name: NF19268_high_23
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 54237954 - 54238118
Alignment:
| Q |
18 |
ggtttttgcttcaatggatcatccgtttatggttaaatatcacaggtattcggcagcaacactgaaagtatagtaagtgtgatttttctcttttatttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54237954 |
ggtttttgcttcaatggatcatccgtttatggttaaataacataggtattcggcagcaacactgaaagtatagtaagtgtgatttttctcttttatttga |
54238053 |
T |
|
| Q |
118 |
gtttgaaccgaaactccaactccaattatccgttaattactcaaacaagctaagttccccaactc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54238054 |
gtttgaaccgaaactccaactccaattatccgttaattactcaaacaagctaagttccccaactc |
54238118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University