View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_high_5 (Length: 525)
Name: NF19268_high_5
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 82 - 514
Target Start/End: Original strand, 31377799 - 31378231
Alignment:
| Q |
82 |
tggataaaaccgtatgacttggtttatttnnnnnnnttgtatttatattaaatcggatggttcagttttaaaaacttctaaaacaactcatgactagtgt |
181 |
Q |
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||||||||| || |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31377799 |
tggataaaatcggatgatttggtttatttaaaaaaattgtatttctattaaatcggatggttcagttttaaaaacttctaaaacaactcatgactagtgt |
31377898 |
T |
|
| Q |
182 |
tatcatcnnnnnnnnnnnnnctcatgacgagtgtataatatatattgtgnnnnnnnncatatacttcatccgatcctattaacaagaaacaatttaaaaa |
281 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31377899 |
tatcatcaaaaaaataagaactcatgacgagtgtataatatatattgtgaaaaaaaacatatacttcatccgattctattaacaagaaacaatttaaaaa |
31377998 |
T |
|
| Q |
282 |
attgtttgccgtctacgttttctcgagaactttccacatctctcattcagcattaaattacagttctatctatcacacatgtttcattctccatttctct |
381 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31377999 |
attgtttgccgtctacgttttctcgagaactttccacatctctcattcagcattaaattacagttctatctatcacacatgtttcattctccatttctct |
31378098 |
T |
|
| Q |
382 |
ttcaatcaccaaattccttgtatctttctatttgtgccatttggacactatccctctgccttcccatcttttccctacactcttcaatggagtctcgata |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31378099 |
ttcaatcaccaaattccttgtatctttctatttgtgccatttggacactatccctctgccttcccatcttttccctacactcttcaatggagtctcgata |
31378198 |
T |
|
| Q |
482 |
tttgtttctcaatttgcgttcccattctttcat |
514 |
Q |
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| T |
31378199 |
tttgtttctcaatttgcgttcccattctttcat |
31378231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 31377645 - 31377723
Alignment:
| Q |
8 |
cccgctgtactggtttttgtctagtaattcaaatttattatgtctaactcatggtatttaattcattttaaaaatggat |
86 |
Q |
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|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31377645 |
cccgctgtactgttttttgtctaataattcaaatttattatgtctaactcatggtatttaattcattttaaaaatggat |
31377723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 396
Target Start/End: Original strand, 31393609 - 31393734
Alignment:
| Q |
272 |
aatttaaaaaattgtttgccgtctacgttttctcgagaactttccacatctctcattcagcattaaattacagttctatctatcacaca-tgtttcattc |
370 |
Q |
| |
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||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||| | |||| || |||||||| |||| || |||||||||| |
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| T |
31393609 |
aatttcaaaaattgtttgccccctactttttctcgagaactttccacatctctcattcagcttccaattgcacttctatctttcacccagtgtttcattc |
31393708 |
T |
|
| Q |
371 |
tccatttctctttcaatcaccaaatt |
396 |
Q |
| |
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| | ||| |||||||||||||||||| |
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|
| T |
31393709 |
ttcctttttctttcaatcaccaaatt |
31393734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 272 - 396
Target Start/End: Original strand, 30607771 - 30607894
Alignment:
| Q |
272 |
aatttaaaaaattgtttgccgtctacgttttctcgagaactttccacatctctcattcagcattaaattacagttctatctatcacacatgtttcattct |
371 |
Q |
| |
|
||||| |||||||||||||| || | ||||||| |||||||||||||||||||||||||| || |||| | || ||||| |||| | |||||||||| |
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| T |
30607771 |
aatttgaaaaattgtttgccacctgcattttctcaagaactttccacatctctcattcagc-ttcaattgtacttttatctttcacccgtgtttcattcg |
30607869 |
T |
|
| Q |
372 |
ccatttctctttcaatcaccaaatt |
396 |
Q |
| |
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| |||||||||||||||||||||| |
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|
| T |
30607870 |
tcttttctctttcaatcaccaaatt |
30607894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 41569246 - 41569211
Alignment:
| Q |
242 |
atacttcatccgatcctattaacaagaaacaattta |
277 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
41569246 |
atacttcatccgatcctatttacaagaaacaattta |
41569211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 44736775 - 44736811
Alignment:
| Q |
241 |
tatacttcatccgatcctattaacaagaaacaattta |
277 |
Q |
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|||||||| |||||||||||| ||||||||||||||| |
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| T |
44736775 |
tatacttcctccgatcctatttacaagaaacaattta |
44736811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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