View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_high_8 (Length: 510)
Name: NF19268_high_8
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_high_8 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 25197690 - 25197223
Alignment:
| Q |
18 |
ccatatatccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgttgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197690 |
ccatatatccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgttgtt |
25197591 |
T |
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| Q |
118 |
cttgcggcaaacaatacaggtgaataaagccttaaagtctcttgaatcaccattgttaactgcaaaataaaacaaaattttgatagttatttactggatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197590 |
cttgcggcaaacaatacaggtgaataaagccttaaagtctcttgaatcaccattgttaactgcaaaataaaacaaaattttgatagttatttactggat- |
25197492 |
T |
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| Q |
218 |
catgcataagaatgttaatgaagctttgaaaagatgtagtacaattggattgataattgtgaccaaaattgtgacatgattaatatgaagtgcaagggat |
317 |
Q |
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| T |
25197491 |
---gcataagaatgttaatgaagctatgaaaagatgtagtacaattgtattgat------------aattgtgacatgattaatatgaagtgcaagggat |
25197407 |
T |
|
| Q |
318 |
gaaatatattttatggaaacatgaaattttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaa |
417 |
Q |
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| T |
25197406 |
gaaatata-tttatggaaacatgtaattttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaa |
25197308 |
T |
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| Q |
418 |
gtacctctgcacgagcacggtcttgccaatcttggtatttagccaacaatactaagcaccatgttgatgtaattgcagtattatc |
502 |
Q |
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| T |
25197307 |
gtacctctgcacgagcacggtcttgccaatcttggtatttagccaacaatattaagcaccatgttgatgtaattgcagtagtatc |
25197223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 1763108 - 1763063
Alignment:
| Q |
136 |
ggtgaataaagccttaaagtctcttgaatcaccattgttaactgca |
181 |
Q |
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| T |
1763108 |
ggtggataaagcctcaatgtctcttgaatcaccattgttaactgca |
1763063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 345 - 502
Target Start/End: Complemental strand, 19207778 - 19207621
Alignment:
| Q |
345 |
tttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgcc |
444 |
Q |
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| T |
19207778 |
tttggtgtaaaacataccgttttcatggttctaagtatacttgcatctggattaccatttccgcatacttcaagcacctctgcacgagcacgatcttgcc |
19207679 |
T |
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| Q |
445 |
aatcttggtatttagccaacaatactaagcaccatgttgatgtaattgcagtattatc |
502 |
Q |
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| T |
19207678 |
aatcttggtatttagctaacaacattaagcaccaagatgatgtaattgcagtagtatc |
19207621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 19208201 - 19208058
Alignment:
| Q |
40 |
aatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgttgttcttgcggcaaacaatacaggtg |
139 |
Q |
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| T |
19208201 |
aatatcgcaattggaatctgcatattaattccttttggaactttgataccttttaaattaatatcttggaatgatgttctggtgataaatactgctggtg |
19208102 |
T |
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| Q |
140 |
aataaagccttaaagtctcttgaatcaccattgttaactgcaaa |
183 |
Q |
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| T |
19208101 |
gataaagcctcaaagtctcttgaatcaccatggttaactgcaaa |
19208058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 345 - 480
Target Start/End: Complemental strand, 10084 - 9949
Alignment:
| Q |
345 |
tttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgcc |
444 |
Q |
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||||||||||||| |||||||||||| ||||||| || |||||||||||||| | | || |||||||||||| ||||| |||||| |||| ||||||| |
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| T |
10084 |
tttggtgtaaaacgtaccgttttcatgcttctaagtatatttgcatctagattatcatttccacaaacttcaagcacctccgcacgaacacgatcttgcc |
9985 |
T |
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| Q |
445 |
aatcttggtatttagccaacaatactaagcaccatg |
480 |
Q |
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| T |
9984 |
aatcttggtatgtagctaacaacattaagcaccatg |
9949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 10461 - 10318
Alignment:
| Q |
40 |
aatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgttgttcttgcggcaaacaatacaggtg |
139 |
Q |
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||||| |||||||||||||||||| | ||||||||||||| |||||||||||||| | | ||||| || | |||||| | | ||| | | | || | |
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| T |
10461 |
aatattgggattggaatctgaatattcattccttttggaactttgataccttttatgttaatatcttggaaagctgttctggtgagaaatactgctggcg |
10362 |
T |
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| Q |
140 |
aataaagccttaaagtctcttgaatcaccattgttaactgcaaa |
183 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
10361 |
gataaagcctcaaagtctcttgaatcaccatggttaactgcaaa |
10318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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