View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19268_low_1 (Length: 744)
Name: NF19268_low_1
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_low_1 |
 | |
|
| [»] scaffold0159 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 696; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 19 - 726
Target Start/End: Complemental strand, 5830456 - 5829749
Alignment:
| Q |
19 |
aagttttcagggtacaatcactcaaccaacttagcatgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggtttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830456 |
aagttttcagggtacaatcactcaaccaacttagcatgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggtttt |
5830357 |
T |
|
| Q |
119 |
ctttgctttaacaatgacggcaatcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattccgcagcttcaatatttgaaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5830356 |
ctttgctttaacaatgacggcaatcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattctgcagcttcaatatttgaaatt |
5830257 |
T |
|
| Q |
219 |
attgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830256 |
attgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacc |
5830157 |
T |
|
| Q |
319 |
caacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatctgcaaaggtaatgttttggttgtacaaacccgtttgttgagaatatgt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5830156 |
caacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatctgcaaaggtaatgttttggttgtacaaacccatttgttgagaatatgt |
5830057 |
T |
|
| Q |
419 |
aatgtatttaaattgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830056 |
aatgtatttaaattgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattt |
5829957 |
T |
|
| Q |
519 |
tatgaccctaattctggacgtatattactagatggagtggatctcaaaactttcagattaagttggttgagacaacaaatggggttggttggtcaagagc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829956 |
tatgaccctaattctggacgtatattactagatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagc |
5829857 |
T |
|
| Q |
619 |
ctattcttttcaacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgc |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829856 |
ctattcttttcaacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgc |
5829757 |
T |
|
| Q |
719 |
acacagct |
726 |
Q |
| |
|
|||||||| |
|
|
| T |
5829756 |
acacagct |
5829749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 430 - 723
Target Start/End: Original strand, 5826856 - 5827149
Alignment:
| Q |
430 |
attgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaa |
529 |
Q |
| |
|
|||| |||||||| | | || ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||| | |
|
|
| T |
5826856 |
attgttgatatatttatatgtagactgttgccttggttggagaaagtggcagtggaaaatcaacagttataagtctcttggagagattttataaccctga |
5826955 |
T |
|
| Q |
530 |
ttctggacgtatattactagatggagtggatctcaaaactttcagattaagttggttgagacaacaaatggggttggttggtcaagagcctattcttttc |
629 |
Q |
| |
|
|||||||| |||||||||||||||| || || |||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5826956 |
ttctggacatatattactagatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttc |
5827055 |
T |
|
| Q |
630 |
aacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacaca |
723 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
5827056 |
aacgaaagcattcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacaca |
5827149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 429 - 723
Target Start/End: Original strand, 5768402 - 5768696
Alignment:
| Q |
429 |
aattgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattttatgacccta |
528 |
Q |
| |
|
||||| |||||||| | | || ||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
5768402 |
aattgttgatatatttttatgtagactgttgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataaccctg |
5768501 |
T |
|
| Q |
529 |
attctggacgtatattactagatggagtggatctcaaaactttcagattaagttggttgagacaacaaatggggttggttggtcaagagcctattctttt |
628 |
Q |
| |
|
| |||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
5768502 |
actctggacgtatattactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattctttt |
5768601 |
T |
|
| Q |
629 |
caacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacaca |
723 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||| ||||||| ||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
5768602 |
caacgaaagcattcgtgccaacatagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacaca |
5768696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 99 - 353
Target Start/End: Original strand, 5768051 - 5768305
Alignment:
| Q |
99 |
agataatttatacaggttttctttgctttaacaatgacggcaatcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattccg |
198 |
Q |
| |
|
||||| ||||| |||||||||||| |||||| || || ||| | | | |||| ||| | | ||| |||||||| |||||||| |||||||||||||| | |
|
|
| T |
5768051 |
agatattttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctg |
5768150 |
T |
|
| Q |
199 |
cagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttca |
298 |
Q |
| |
|
|||||||||||||||||||| | ||||| || ||| ||| || ||||||||||||| ||||| ||| ||||||||| || |||||||||||||| |
|
|
| T |
5768151 |
cagcttcaatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttca |
5768250 |
T |
|
| Q |
299 |
acatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagattta |
353 |
Q |
| |
|
|||||||| ||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5768251 |
acatgtcagcttcaattacccaacaagacctcacattcaaattttcaaagattta |
5768305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 111 - 382
Target Start/End: Original strand, 5826408 - 5826679
Alignment:
| Q |
111 |
caggttttctttgctttaacaatgacggcaatcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattccgcagcttcaatat |
210 |
Q |
| |
|
||||||||||| ||||||||| || ||||| | ||||||||||| | | | || |||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
5826408 |
caggttttcttctgtttaacaattacagcaataggtgtttcgcagactagtgctttagcaccagatactaacaaggccaaagattctacagcttcaatat |
5826507 |
T |
|
| Q |
211 |
ttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactt |
310 |
Q |
| |
|
|||||||| | ||||||||||| ||||| || || || |||| ||||| || | |||||| || |||||| ||||||||||| | |||| ||| |
|
|
| T |
5826508 |
ttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctagaaactgtgaaaggtgattttgaacttcaaaaagtcagctt |
5826607 |
T |
|
| Q |
311 |
taattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatctgcaaaggtaat |
382 |
Q |
| |
|
|| |||||||||||||| | |||||||| ||||||||||| | || ||||||||| ||| ||||||||| |
|
|
| T |
5826608 |
tagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagctggaaaggtaat |
5826679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 171 - 382
Target Start/End: Original strand, 5781920 - 5782131
Alignment:
| Q |
171 |
ccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgag |
270 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||| || || || |||| ||||| || | || |
|
|
| T |
5781920 |
ccagatactaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctag |
5782019 |
T |
|
| Q |
271 |
aaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatc |
370 |
Q |
| |
|
|||| || |||||| ||||||||||| | |||| ||||| |||||||||||||| | |||||||| ||||||||||| | || ||||||||| | |
|
|
| T |
5782020 |
aaactgtgaaaggtgattttgaacttcaaaaagtcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagc |
5782119 |
T |
|
| Q |
371 |
tgcaaaggtaat |
382 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
5782120 |
tggaaaggtaat |
5782131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 85 - 723
Target Start/End: Complemental strand, 29327910 - 29327266
Alignment:
| Q |
85 |
atctagttcttacaagataatttatacaggttttctttgctttaacaatgacggcaatcgccgtttcgcagacgactacattggcaccagacactaacaa |
184 |
Q |
| |
|
|||| |||||||||| |||| |||| |||||||||||| ||| |||||||| ||||| | ||||| ||| | |||||||| || ||||||||||| |
|
|
| T |
29327910 |
atctggttcttacaaaataaattatgcaggttttctttagtttgacaatgacagcaatgtctgtttcccagtcttctacattgtttcccgacactaacaa |
29327811 |
T |
|
| Q |
185 |
ggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgagaaacagtagttggt |
284 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||| |
|
|
| T |
29327810 |
ggccatagattccgcagcttcaatatttaacattcttgacagcaaacctgatattgattccagcagcaatgatggtgtaacacaagaaactgtcgttggc |
29327711 |
T |
|
| Q |
285 |
gatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatctgcaaaggtaatgt |
384 |
Q |
| |
|
| || ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
29327710 |
aacatcgaacttcaacacgtcaactttagttacccaacaagacccgacattcaaattttcaaagatttaaccctaagcatcccatctgcaaaggtaaact |
29327611 |
T |
|
| Q |
385 |
tttggttgtacaaacccgtttgttgagaatatgtaa----tgtatttaaattgatgatatatgt----ctttgcagactattgccttggttggagaaagt |
476 |
Q |
| |
|
||| ||| |||||| | || | ||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
29327610 |
tttagttctacaaatcagtat--tgagaatgtgtaaagtatgtatttaaattgatgatatatgtatgtctttgcagactgttgctttggttggagaaagc |
29327513 |
T |
|
| Q |
477 |
ggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaattctggacgtatattactagatggagtggatctcaaaactttcagat |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
29327512 |
ggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaattccggacgcgtattactagatggagtggatatcaaaactttcagaa |
29327413 |
T |
|
| Q |
577 |
taagttggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcgtgctaacataggttatggaaaagaagggggtgc |
676 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||| ||||| |
|
|
| T |
29327412 |
taagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgcgccaacatagcttatggtaaagaagatggtgc |
29327313 |
T |
|
| Q |
677 |
tacagaggatgagatcattgcagcagctaacgcagcaaatgcacaca |
723 |
Q |
| |
|
||| |||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
29327312 |
tacggaggatgagatcatagcagcagcgaacgcagccaatgcacaca |
29327266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 171 - 382
Target Start/End: Original strand, 27252 - 27463
Alignment:
| Q |
171 |
ccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgag |
270 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||| || || || |||| ||||| || | || |
|
|
| T |
27252 |
ccagatactaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctag |
27351 |
T |
|
| Q |
271 |
aaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatc |
370 |
Q |
| |
|
|||| || |||||| ||||||||||| | |||| ||||| |||||||||||||| | |||||||| ||||||||||| | || ||||||||| | |
|
|
| T |
27352 |
aaactgtgaaaggtgattttgaacttcaaaaagtcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagc |
27451 |
T |
|
| Q |
371 |
tgcaaaggtaat |
382 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
27452 |
tggaaaggtaat |
27463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 171 - 382
Target Start/End: Original strand, 35383 - 35594
Alignment:
| Q |
171 |
ccagacactaacaaggccaaagattccgcagcttcaatatttgaaattattgacagcaaacctgatattgattccagcagcaatgcgggtgtaacacgag |
270 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||| || || || |||| ||||| || | || |
|
|
| T |
35383 |
ccagatactaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaaccaaccattgactcaagtagtaatgagggtgcgacgctag |
35482 |
T |
|
| Q |
271 |
aaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcccgacattcaaattttcaaagatttaagcctaagcatcccatc |
370 |
Q |
| |
|
|||| || |||||| ||||||||||| | |||| ||||| |||||||||||||| | |||||||| ||||||||||| | || ||||||||| | |
|
|
| T |
35483 |
aaactgtgaaaggtgattttgaacttcaaaaagtcagctttagatacccaacaaggcctaatattcaaatattcaaagatttgtgtcttagcatcccagc |
35582 |
T |
|
| Q |
371 |
tgcaaaggtaat |
382 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
35583 |
tggaaaggtaat |
35594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 29934488 - 29934416
Alignment:
| Q |
457 |
ttgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaa |
529 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| || | | ||| | ||||||||||||||||| |
|
|
| T |
29934488 |
ttgccctggttggagaaagtggaagtggaaaatcaacagtgatgtccttattacaaagattttatgaccctaa |
29934416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 51159544 - 51159577
Alignment:
| Q |
463 |
tggttggagaaagtggcagtggaaaatcaacagt |
496 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
51159544 |
tggttggagaaagtggaagtggaaaatcaacagt |
51159577 |
T |
|
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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 36288551 - 36288588
Alignment:
| Q |
463 |
tggttggagaaagtggcagtggaaaatcaacagttatc |
500 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
36288551 |
tggtaggagaaagtggaagtggaaaatcaacagttatc |
36288588 |
T |
|
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