View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_low_10 (Length: 487)
Name: NF19268_low_10
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Complemental strand, 11113617 - 11113159
Alignment:
| Q |
16 |
acatatatgaagctgccgatgatggttgcatattatgattgtctcacactttcacagtgttcttaaatagttttctacacttgaacccaagtgaataaat |
115 |
Q |
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| T |
11113617 |
acatacatgaagctgccgatgatggttgcatattatgattgtgtcacactttcaccgtgttcttaaatagtt--ctacacttgaaccccagtgaataaat |
11113520 |
T |
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| Q |
116 |
ggggnnnnnnnttatatacgtggtctatccttacaagacatcaattctcgtattagagctacatgcaaacaaacaaaatacatatgctttcaaattggac |
215 |
Q |
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| T |
11113519 |
aggggaaaaaattatatacgtggtctatccttacaagacatcaattctcgtaatagagctacatgcaaacaaacaaaatacatatgctttcaaattggac |
11113420 |
T |
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| Q |
216 |
aagttttctttcattaatacaataaaagaacagtacatacatactcattcaatatagtggttcttattctcttagctttacaataaataataataagcaa |
315 |
Q |
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| T |
11113419 |
aagttttctttcattaatacaataaaagaacagtacatacatactcattcaatatagtggttcttattctcttagctttacaataaataataataagcaa |
11113320 |
T |
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| Q |
316 |
tgacccttaacataataagtaaaaatgaatnnnnnnnngatatggaaagacacttatgtgttgtgttagttacttagtttgagaggaacaattcgaagtg |
415 |
Q |
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| T |
11113319 |
tgacccttaacataataagtaaaaatgaataaaaaaaagatatggaaagacacttgtgtgttgtgttagttacttagtttgagaggaacaattcgaagtg |
11113220 |
T |
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| Q |
416 |
gttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
476 |
Q |
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| T |
11113219 |
gttgagcctcccgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
11113159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 304 - 476
Target Start/End: Original strand, 11106159 - 11106321
Alignment:
| Q |
304 |
aataataagcaatgacccttaacataataagtaaaaatgaatnnnnnnnngatatggaaagacacttatgtgttgtgttagttacttagtttgagaggaa |
403 |
Q |
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| T |
11106159 |
aataataagcaatgacccttaacatagcaagtaaaaatgaa---gcaaaagatatggaaaaacactt-------gtgttagttacttagtttgagaggaa |
11106248 |
T |
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| Q |
404 |
caattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
476 |
Q |
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| T |
11106249 |
caattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
11106321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 476
Target Start/End: Complemental strand, 46927831 - 46927751
Alignment:
| Q |
396 |
gagaggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
476 |
Q |
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| T |
46927831 |
gagaggaagaattcgaaggggtttggctttttgaagagtaagtccaaatttatcatccatatccatatcttctggtttcat |
46927751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 481
Target Start/End: Complemental strand, 46934698 - 46934616
Alignment:
| Q |
399 |
aggaacaattcgaagtggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatctcac |
481 |
Q |
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|||||||| |||||| ||||| |||||||| | ||||| || |||||||||| ||||| |||||||||||||||||| |||| |
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| T |
46934698 |
aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcatgtcac |
46934616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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