View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_low_13 (Length: 442)
Name: NF19268_low_13
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 427
Target Start/End: Complemental strand, 45735977 - 45735561
Alignment:
| Q |
11 |
taatactcttttagattaagattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatcggtgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45735977 |
taatactcttttagattaagattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatcggtgg |
45735878 |
T |
|
| Q |
111 |
atgttcaacaagagaatatactgaaattcctcgacctgtcccccagcacaactctctttgattcccccatcaattccaagccnnnnnnnngcatcatctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45735877 |
atgttcaacaagagaatatactgaaattcctcgacctgtcccccagcacaactctctttgattcccccatcaattccaagccctttttt-gcatcatctt |
45735779 |
T |
|
| Q |
211 |
tgttcggctcagccaaaccaacaacattatcaaaacgaaccattccactcaaagccaaactcgaattatcaacgtcattttccacttttccagatttcct |
310 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45735778 |
tgttcggctcagccaaaccaacaaaattatcaaaacgaaccattccactcaaagccaaactcgaattatcaacgtcactttccacttttccagatttcct |
45735679 |
T |
|
| Q |
311 |
cttggtaactaattctttctttgcagaaccattg-tttttaatagtagcgtccctcttcgaactctttagagttttcccattagtttttcagttttcttc |
409 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45735678 |
cttggtaactaattctttctttgcagaaccactgttttttaatagtagcgtccttcttcgaactctttagagttttcccattagtttttcagttttcttc |
45735579 |
T |
|
| Q |
410 |
aacttcattgggttcatt |
427 |
Q |
| |
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|||||||||||||||||| |
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| T |
45735578 |
aacttcattgggttcatt |
45735561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 111 - 427
Target Start/End: Complemental strand, 45747126 - 45746811
Alignment:
| Q |
111 |
atgttcaacaagagaatatactgaaattcctcgacctgtcccccagcacaactctctttgattcccccatcaattccaagccnnnnnnnngcatcatctt |
210 |
Q |
| |
|
||||||| ||||| |||||||| || |||||| ||| ||| ||| |||||| ||||||||||||||||||||||| ||||| || |||||| |
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| T |
45747126 |
atgttcagcaagataatatacttaacttcctcctcctatcctccaacacaaccctctttgattcccccatcaattcaaagccccttttc-gcggcatctt |
45747028 |
T |
|
| Q |
211 |
tgttcggctcagccaaaccaacaacattatcaaaacgaaccattccactcaaagccaaactcgaattatcaacgtcattttccacttttccagatttcct |
310 |
Q |
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||||| || |||||||||| ||| ||||||| ||| ||||||| |||||||||||||||| ||||||||||| |||| ||| ||||||||||||||| | |
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| T |
45747027 |
tgttcagcccagccaaacccacagaattatcacaacaaaccatttcactcaaagccaaacttgaattatcaacatcatcttcaacttttccagatttctt |
45746928 |
T |
|
| Q |
311 |
cttggtaactaattctttctttgcagaaccattgtttttaatagtagcgtccctcttcgaactctttagagttttcccattagtttttcagttttcttca |
410 |
Q |
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|
||||||||||||||||||||| ||||||||| |||| |||||||||| ||| |||| ||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
45746927 |
cttggtaactaattctttcttagcagaaccacggtttctaatagtagcatccttcttagaactctttggagttttcccattaatttttccgttttcttcg |
45746828 |
T |
|
| Q |
411 |
acttcattgggttcatt |
427 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
45746827 |
gcttcattgggtccatt |
45746811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 36050596 - 36050520
Alignment:
| Q |
29 |
agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc |
105 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||| ||||| | ||||| ||||| |||||| |||||||||||| |
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| T |
36050596 |
agattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatc |
36050520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 36053855 - 36053779
Alignment:
| Q |
29 |
agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc |
105 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||| ||||| | ||||| ||||| |||||| |||||||||||| |
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|
| T |
36053855 |
agattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatc |
36053779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 41709466 - 41709390
Alignment:
| Q |
29 |
agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc |
105 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||| | ||||| | ||||||||| ||||||||| | |||||||||| |
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| T |
41709466 |
agattaagatgagtcatactaccttctagaactagaggagtcaccacatttatattccttattctagatatcctatc |
41709390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 44765206 - 44765130
Alignment:
| Q |
29 |
agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc |
105 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||| ||||| | ||||||||| ||||||||| | |||||||||| |
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|
| T |
44765206 |
agattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc |
44765130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 44761900 - 44761824
Alignment:
| Q |
29 |
agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc |
105 |
Q |
| |
|
|||||||||||| ||| |||| |||||||| ||| ||||| | ||||||||| ||||||||| | |||||||||| |
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|
| T |
44761900 |
agattaagatgagtcaaactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatc |
44761824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 42513269 - 42513345
Alignment:
| Q |
29 |
agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc |
105 |
Q |
| |
|
|||||||| ||| ||||| || |||||||| ||| ||||||| | ||||| | |||||||||| |||||||||||| |
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| T |
42513269 |
agattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatc |
42513345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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