View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19268_low_14 (Length: 391)

Name: NF19268_low_14
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19268_low_14
NF19268_low_14
[»] chr5 (8 HSPs)
chr5 (18-188)||(34241583-34241753)
chr5 (233-390)||(34241383-34241538)
chr5 (257-390)||(34233610-34233743)
chr5 (278-366)||(42116871-42116960)
chr5 (300-366)||(42128052-42128118)
chr5 (258-366)||(42122614-42122723)
chr5 (295-373)||(41572853-41572929)
chr5 (138-188)||(34234338-34234388)
[»] chr2 (3 HSPs)
chr2 (290-352)||(32682495-32682557)
chr2 (258-330)||(11995282-11995353)
chr2 (293-330)||(12247609-12247646)
[»] chr4 (1 HSPs)
chr4 (281-366)||(11117294-11117380)
[»] chr8 (1 HSPs)
chr8 (281-318)||(30021068-30021105)
[»] chr3 (1 HSPs)
chr3 (290-366)||(8522263-8522340)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 34241753 - 34241583
Alignment:
Q  18 gaaagtgatgaagtataataacacagaatcaaaaactctaactccattttcatcctgggaaatccaaaacatgaatgaaatgctcatgctgctgcctgct 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34241753 gaaaatgatgaagtataataacacagaatcaaaaactctaactccattttcatcctggaaaatccaaaacatgaatgaaatgctcatgctgctgcctgct 34241654  T
Q  118 agtgttggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241653 agtgttggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 34241583  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 233 - 390
Target Start/End: Complemental strand, 34241538 - 34241383
Alignment:
Q  233 ctagatcaaataagaatgagtcgatagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccaga 332  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  34241538 ctagatcaaataagaatgagtcgatagattgtcaaactcacatcaaaacttattttaaacaga--gtaaaaactaacacacaatagagaaaataaccaga 34241441  T
Q  333 ataataaaactatgacatttgcaccatcttattcatggttggacctttgcttctcctc 390  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  34241440 ataataaaactatgacatttgcaccatctgattcatggttggaccattgtttctcctc 34241383  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 257 - 390
Target Start/End: Complemental strand, 34233743 - 34233610
Alignment:
Q  257 tagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacaca--atagagaaaataaccagaataataaaactatgacatttgc 354  Q
    |||||||| ||||||||| ||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  34233743 tagattgttacactcacaccaaaacttattttaaacaga--gtaaaaactaacacacacaatagagaaaataaccagaataataaaactatgacatttgc 34233646  T
Q  355 accatcttattcatggttggacctttgcttctcctc 390  Q
    ||||||| ||||||||||||||| ||| ||||||||    
T  34233645 accatctgattcatggttggaccattgtttctcctc 34233610  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 278 - 366
Target Start/End: Original strand, 42116871 - 42116960
Alignment:
Q  278 aaacttattttaaacagaaagtaaaa-actaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 366  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||    
T  42116871 aaacttattttaagaagaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattc 42116960  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 42128052 - 42128118
Alignment:
Q  300 aaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 366  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  42128052 aaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattc 42128118  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 366
Target Start/End: Original strand, 42122614 - 42122723
Alignment:
Q  258 agattgtcacactcaca-tcaaaacttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgca 355  Q
    ||||||||||||||| | |||| | ||||||||||||||||||||||| | ||||||||| ||| ||| |||| | || |||||||||||||||||||||    
T  42122614 agattgtcacactcaaaatcaaga-ttattttaaacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgca 42122712  T
Q  356 ccatcttattc 366  Q
    |||||| ||||    
T  42122713 ccatctgattc 42122723  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 41572929 - 41572853
Alignment:
Q  295 aaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattcatggttg 373  Q
    |||| ||||||||||||| ||  |||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||    
T  41572929 aaaggaaaaactaacacagaa--gagaaaataatcagaacaataaaactatcacatctgcaccatctaattcatggttg 41572853  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 34234388 - 34234338
Alignment:
Q  138 tttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 188  Q
    |||| ||||||||||||| |||||||||||||||||| || | ||||||||    
T  34234388 tttctgtttgtgtacttgcaaaactcaattttgtactaataagattagatg 34234338  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 32682557 - 32682495
Alignment:
Q  290 aacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacattt 352  Q
    |||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||    
T  32682557 aacagaaagtaaaaactaacacacaatagagaaaataagcacaacaataagactatgacattt 32682495  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 11995353 - 11995282
Alignment:
Q  258 agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataacca 330  Q
    ||||| ||||||||| |||||| ||||||| ||| | || |||||||||||||||||||||||||||||||||    
T  11995353 agattatcacactcagatcaaa-cttatttaaaatacaaggtaaaaactaacacacaatagagaaaataacca 11995282  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 12247609 - 12247646
Alignment:
Q  293 agaaagtaaaaactaacacacaatagagaaaataacca 330  Q
    |||| |||||||||||||||||||||||||||||||||    
T  12247609 agaaggtaaaaactaacacacaatagagaaaataacca 12247646  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 11117294 - 11117380
Alignment:
Q  281 cttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 366  Q
    |||||||||||||||||||||||| | ||||| |||  |||||| |||| |  | ||||||||||||||||||||||||||| ||||    
T  11117294 cttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattc 11117380  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 30021068 - 30021105
Alignment:
Q  281 cttattttaaacagaaagtaaaaactaacacacaatag 318  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  30021068 cttattttaaatagaaggtaaaaactaacacacaatag 30021105  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 8522263 - 8522340
Alignment:
Q  290 aacagaaagtaaaaact-aacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 366  Q
    ||||||||||||||||  |||| |||| |||||||||||  | || || ||||||| |||||||||||||||| ||||    
T  8522263 aacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaacaaaactacgacatttgcaccatctgattc 8522340  T

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