View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19268_low_22 (Length: 204)

Name: NF19268_low_22
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19268_low_22
NF19268_low_22
[»] chr3 (6 HSPs)
chr3 (16-64)||(37278535-37278583)
chr3 (19-63)||(39948609-39948653)
chr3 (19-64)||(35966325-35966370)
chr3 (16-64)||(4659619-4659667)
chr3 (20-64)||(35359801-35359845)
chr3 (27-63)||(45521067-45521103)
[»] scaffold0160 (1 HSPs)
scaffold0160 (16-63)||(22163-22210)
[»] chr2 (18 HSPs)
chr2 (16-63)||(18741398-18741445)
chr2 (16-64)||(637045-637093)
chr2 (16-64)||(22999156-22999204)
chr2 (16-64)||(31671245-31671293)
chr2 (16-64)||(39417523-39417571)
chr2 (17-64)||(5618476-5618523)
chr2 (25-60)||(19954903-19954938)
chr2 (23-64)||(25994653-25994694)
chr2 (18-63)||(29360631-29360676)
chr2 (16-64)||(816427-816475)
chr2 (20-64)||(15488833-15488877)
chr2 (19-63)||(18055942-18055986)
chr2 (20-64)||(18999413-18999457)
chr2 (27-63)||(19832241-19832277)
chr2 (16-64)||(22382332-22382380)
chr2 (16-64)||(22914358-22914406)
chr2 (16-64)||(32517817-32517865)
chr2 (20-64)||(43461334-43461378)
[»] chr1 (9 HSPs)
chr1 (16-63)||(19596656-19596703)
chr1 (25-64)||(16867399-16867438)
chr1 (23-64)||(236656-236697)
chr1 (16-64)||(44836117-44836165)
chr1 (17-63)||(50905516-50905562)
chr1 (16-61)||(37315056-37315101)
chr1 (20-64)||(13018157-13018201)
chr1 (16-64)||(37186816-37186864)
chr1 (20-64)||(49948325-49948369)
[»] chr7 (7 HSPs)
chr7 (16-64)||(45957333-45957381)
chr7 (17-64)||(8059927-8059974)
chr7 (103-191)||(8059989-8060076)
chr7 (19-64)||(12961823-12961868)
chr7 (20-64)||(2228080-2228124)
chr7 (20-64)||(16862472-16862516)
chr7 (31-63)||(37938064-37938096)
[»] chr4 (13 HSPs)
chr4 (16-63)||(37340108-37340155)
chr4 (16-64)||(32057723-32057771)
chr4 (16-64)||(37759510-37759558)
chr4 (25-63)||(46343419-46343457)
chr4 (23-64)||(7413179-7413220)
chr4 (23-64)||(7459259-7459300)
chr4 (23-60)||(29974394-29974431)
chr4 (17-62)||(33530301-33530346)
chr4 (31-64)||(40597558-40597591)
chr4 (20-64)||(11371060-11371104)
chr4 (20-64)||(47462036-47462080)
chr4 (16-64)||(50981729-50981777)
chr4 (20-64)||(54864480-54864524)
[»] chr8 (10 HSPs)
chr8 (23-64)||(15589255-15589296)
chr8 (20-64)||(33540237-33540281)
chr8 (16-63)||(32778579-32778626)
chr8 (20-61)||(10286468-10286509)
chr8 (20-64)||(3673843-3673887)
chr8 (19-63)||(5917365-5917409)
chr8 (16-64)||(18641515-18641563)
chr8 (20-64)||(20662606-20662650)
chr8 (19-63)||(34642438-34642482)
chr8 (20-64)||(36586566-36586610)
[»] chr5 (8 HSPs)
chr5 (16-64)||(6525920-6525968)
chr5 (16-63)||(10083929-10083976)
chr5 (20-64)||(972594-972638)
chr5 (20-64)||(1277522-1277566)
chr5 (20-64)||(23219114-23219158)
chr5 (16-64)||(24406644-24406692)
chr5 (20-64)||(26310748-26310792)
chr5 (20-64)||(40596040-40596084)
[»] chr6 (2 HSPs)
chr6 (15-63)||(19225846-19225894)
chr6 (20-64)||(24571617-24571661)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37278583 - 37278535
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37278583 cactttgtatgtgtgagtttatgatgactttgtcatctcgtctatctac 37278535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 39948609 - 39948653
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  39948609 tttgtatgtgtgagtttatgatgactttgtcatctcgtctatcta 39948653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 35966325 - 35966370
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  35966325 tttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 35966370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 4659619 - 4659667
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| | ||||| ||||||| |||||||| |||||||||||||||||    
T  4659619 cactttatgtgtgtgagtttataatgactttttcatctcgtctatctac 4659667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 35359801 - 35359845
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  35359801 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 35359845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 45521103 - 45521067
Alignment:
Q  27 tgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  45521103 tgttagtttataatgactttgtcatttcgtctatcta 45521067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 22163 - 22210
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  22163 cactttgtgtgtgtgagtttatgatgactttgtcatctcgtctatcta 22210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 18741445 - 18741398
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  18741445 cactttgtgtgtgtgagtttatgatgactttgtcatctcgtctatcta 18741398  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 637045 - 637093
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  637045 cactttgtgtgtgtgagtttatgatgattttgccatctcgtctatctac 637093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 22999156 - 22999204
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||  |||||||||||||||||||||    
T  22999156 cactttgtgtgtgtgagtttatgatggttttgtcatctcgtctatctac 22999204  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 31671245 - 31671293
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| ||||||| ||||||||||||||||| | ||||||||||||||    
T  31671245 cactttatatgtgtgagtttatgatgactttgccgtctcgtctatctac 31671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 39417523 - 39417571
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| | ||||| |||||||||||||||| |||||||||||||||||    
T  39417523 cactttatgtgtgtgagtttatgatgactttatcatctcgtctatctac 39417571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 5618476 - 5618523
Alignment:
Q  17 actttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| || || |||||||||||||||||||||||||| |||||||    
T  5618476 actttgtgtgcgtgagtttatgatgactttgtcatctcgtttatctac 5618523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 19954938 - 19954903
Alignment:
Q  25 tgtgttagtttatgatgactttgtcatctcgtctat 60  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19954938 tgtgtgagtttatgatgactttgtcatctcgtctat 19954903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 25994694 - 25994653
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| |||||||||||||||| ||||||||| |||||||    
T  25994694 tatgtgtgagtttatgatgactttatcatctcgtttatctac 25994653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 29360676 - 29360631
Alignment:
Q  18 ctttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||| ||||||||||| ||||| |||||||||||||||    
T  29360676 ctttgtatatgtgagtttatgatggctttgccatctcgtctatcta 29360631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 816427 - 816475
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||  |||| ||||||||||||||||    
T  816427 cactttgtgtgtgtgagtttatgatggttttgccatctcgtctatctac 816475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 15488833 - 15488877
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  15488833 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 15488877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 18055942 - 18055986
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  18055942 tttgtgtgtgtgagtttataatgactttgtcatttcgtctatcta 18055986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 18999413 - 18999457
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  18999413 ttgtgtgtgtgagtttattatgactttgtcatttcgtctatctac 18999457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 19832241 - 19832277
Alignment:
Q  27 tgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  19832241 tgttagtttataatgactttgtcatttcgtctatcta 19832277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 22382380 - 22382332
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| | ||| |||||||||||  |||||||||||||||||||||    
T  22382380 cactttgtgtatgtgagtttatgatggttttgtcatctcgtctatctac 22382332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 22914406 - 22914358
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| | ||| |||||||||||  |||||||||||||||||||||    
T  22914406 cactttgtgtatgtgagtttatgatggttttgtcatctcgtctatctac 22914358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32517865 - 32517817
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| ||||||||||||||||| |||||  |||||||||    
T  32517865 cactttgtgtgtgtgagtttatgatgactttgccatcttatctatctac 32517817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 43461378 - 43461334
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  43461378 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 43461334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 19596703 - 19596656
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  19596703 cactttgtatgtgttagtttacgatgactttgccatctcgtctatcta 19596656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 16867438 - 16867399
Alignment:
Q  25 tgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  16867438 tgtgtgagtttatgatgactttgtcatctcgtctatctac 16867399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 236656 - 236697
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| ||||||||||||||||||||||| ||||||||||    
T  236656 tatgtgtgagtttatgatgactttgtcatcttgtctatctac 236697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 44836165 - 44836117
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| ||||||| ||||||||||| |||||||||||| |||||||||    
T  44836165 cactttatatgtgtgagtttatgatggctttgtcatctcatctatctac 44836117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 50905516 - 50905562
Alignment:
Q  17 actttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||| ||||| ||||||| |||||||||||||||||| ||||||    
T  50905516 actttgtgtgtgtgagtttataatgactttgtcatctcgtttatcta 50905562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 37315101 - 37315056
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatc 61  Q
    |||||||| ||||| ||||| || ||||||||||||||||||||||    
T  37315101 cactttgtgtgtgtgagtttgtgttgactttgtcatctcgtctatc 37315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 13018157 - 13018201
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||| ||| ||||||||| ||||||||||||    
T  13018157 ttgtatgtgtcagtttataatggctttgtcatttcgtctatctac 13018201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37186864 - 37186816
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||| | ||||||||||| |||||||||||| |||||||||    
T  37186864 cactttgtgtgtttgagtttatgatggctttgtcatctcttctatctac 37186816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 49948325 - 49948369
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  49948325 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 49948369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 45957381 - 45957333
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  45957381 cactttgtgtgtgttagtttatgaagactttgtcatctcttctatctac 45957333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 8059927 - 8059974
Alignment:
Q  17 actttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  8059927 actttgtatgtgtgagtttgtcatgactttgtcatctcgtctatctac 8059974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 8059989 - 8060076
Alignment:
Q  103 tattctgttatattacaaatttatctatannnnnnnccaacaattgtaaaatttctccttccagcatgcttgtgccttgaccctatgct 191  Q
    ||||| |||||||||||||||||||||||       || ||||  ||||||| |||||||||| |||||||||||||||||||| ||||    
T  8059989 tattcagttatattacaaatttatctatatttttttcctacaac-gtaaaatctctccttccaacatgcttgtgccttgaccctctgct 8060076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 12961868 - 12961823
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||    
T  12961868 tttgtgtgtgtgagtttatgatgactttgtcatctcttctatctac 12961823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 2228124 - 2228080
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  2228124 ttgtatgtgtgagtttataatgactttgtcatttcgtctatctac 2228080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 16862472 - 16862516
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||||||||||||||||| ||| ||||||||    
T  16862472 ttgtgtgtgtgagtttatgatgactttgtcatttcgcctatctac 16862516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 37938096 - 37938064
Alignment:
Q  31 agtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||||||||||||||||||||| ||||||    
T  37938096 agtttatgatgactttgtcatctcgtttatcta 37938064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 37340155 - 37340108
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  37340155 cactttgtgtgtgtgagtttatgatgattttgtcatctcgtctatcta 37340108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32057771 - 32057723
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||  |||||||||||||||||||||    
T  32057771 cactttgtgtgtgtgagtttatgatggttttgtcatctcgtctatctac 32057723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 37759510 - 37759558
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| ||||||||||| |||||||||||| |||||||||    
T  37759510 cactttgtgtgtgtgagtttatgatggctttgtcatctcttctatctac 37759558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 46343419 - 46343457
Alignment:
Q  25 tgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  46343419 tgtgtgagtttatgatgactttgtcatctcttctatcta 46343457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 7413179 - 7413220
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||    
T  7413179 tatgtgtgagtttataatgactttgtcatttcgtctatctac 7413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 7459259 - 7459300
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||    
T  7459259 tatgtgtgagtttataatgactttgtcatttcgtctatctac 7459300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 29974431 - 29974394
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctat 60  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  29974431 tatgtgtgagtttataatgactttgtcatctcgtctat 29974394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 33530301 - 33530346
Alignment:
Q  17 actttgtatgtgttagtttatgatgactttgtcatctcgtctatct 62  Q
    ||||||| ||||| |||||||||| ||||| |||||||||||||||    
T  33530301 actttgtgtgtgtgagtttatgataactttttcatctcgtctatct 33530346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 40597558 - 40597591
Alignment:
Q  31 agtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||||| |||||||||||||||||||||    
T  40597558 agtttatgatgattttgtcatctcgtctatctac 40597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 11371104 - 11371060
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||| ||||||||| ||| ||||||||||||    
T  11371104 ttgtatgtgtgagtttataatgactttgccatttcgtctatctac 11371060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 47462080 - 47462036
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  47462080 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 47462036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 50981777 - 50981729
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| ||||||||||| ||||| |||||| |||||||||    
T  50981777 cactttgtgtgtgtgagtttatgatggctttgacatctcttctatctac 50981729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 54864480 - 54864524
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  54864480 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 54864524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 15589296 - 15589255
Alignment:
Q  23 tatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  15589296 tatgtgtgagtttatgatgaatttgtcatctcgtctatctac 15589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 33540237 - 33540281
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||    
T  33540237 ttgtatgtgtgagtttatgatggctttgccatctcgtctatctac 33540281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 32778579 - 32778626
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| |||||  |||||||||| |||||||||||||||||||||    
T  32778579 cactttgtgtgtgtgggtttatgatggctttgtcatctcgtctatcta 32778626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 10286509 - 10286468
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatc 61  Q
    |||||||||| ||||||| ||||||||||||| |||||||||    
T  10286509 ttgtatgtgtgagtttataatgactttgtcatttcgtctatc 10286468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 3673887 - 3673843
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  3673887 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 3673843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 5917365 - 5917409
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  5917365 tttgtgtgtgtgagtttataatgactttgtcatttcgtctatcta 5917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 18641515 - 18641563
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||| | |||||||||||||| | ||||||||||||| |||||||||    
T  18641515 cactttatgtgtgttagtttatggtaactttgtcatctcatctatctac 18641563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 20662606 - 20662650
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  20662606 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 20662650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 34642482 - 34642438
Alignment:
Q  19 tttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  34642482 tttgtgtgtgtgagtttataatgactttgtcatttcgtctatcta 34642438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 36586566 - 36586610
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||||| ||||||| ||| ||||||||| ||||||||||||    
T  36586566 ttgtatgtgtgagtttataatggctttgtcatttcgtctatctac 36586610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 6525920 - 6525968
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| ||||| |||||||||||||||||||||||| |||| ||||    
T  6525920 cactttgtgtgtgtgagtttatgatgactttgtcatctcttctagctac 6525968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 10083976 - 10083929
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    |||||||| ||||| ||||||||||||||||| | |||||||||||||    
T  10083976 cactttgtgtgtgtaagtttatgatgactttgccctctcgtctatcta 10083929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 972638 - 972594
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  972638 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 972594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 1277522 - 1277566
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  1277522 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 1277566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 23219158 - 23219114
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  23219158 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 23219114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24406644 - 24406692
Alignment:
Q  16 cactttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||||||| |||||  |||||||||| ||||| ||||||||||||||||    
T  24406644 cactttgtgtgtgtatgtttatgatggctttgccatctcgtctatctac 24406692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 26310792 - 26310748
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  26310792 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 26310748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 40596040 - 40596084
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  40596040 ttgtgtgtgtgagtttataatgactttgtcatttcgtctatctac 40596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 19225846 - 19225894
Alignment:
Q  15 tcactttgtatgtgttagtttatgatgactttgtcatctcgtctatcta 63  Q
    ||||||| ||||||| |||||||||||| |||  |||||||||||||||    
T  19225846 tcactttatatgtgtgagtttatgatgattttaccatctcgtctatcta 19225894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 24571661 - 24571617
Alignment:
Q  20 ttgtatgtgttagtttatgatgactttgtcatctcgtctatctac 64  Q
    |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  24571661 ttgtgtgtgtaagtttataatgactttgtcatttcgtctatctac 24571617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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