View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_low_3 (Length: 707)
Name: NF19268_low_3
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 235 - 613
Target Start/End: Complemental strand, 25192548 - 25192170
Alignment:
| Q |
235 |
gaccccttaagtggaatcagctacaaaaatttacaacaccataactattgtaaataaatcaattagatttagatttttcttagtgcatgtttgaattgat |
334 |
Q |
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| T |
25192548 |
gaccccttaagtggaatcagctacaaaaatttacaacaccataactattgtaaataaatcaattagatttagatttttcttagtgcatgtttgaattgat |
25192449 |
T |
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| Q |
335 |
gatgagtttaacatagtcacaatcagataccataattttgacaaaatatagatttagaacatcaacaaaatcactgtttatttcatcaaactcatcataa |
434 |
Q |
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| T |
25192448 |
gatgagtttaacatagtcacaatcagataccataattttgacaaaatatagatttagaacatcaataaaatcactgtttatttcatcaaactcatcataa |
25192349 |
T |
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| Q |
435 |
atccaaacatgcaagcttataatttgtgtctctaattattaaatgacactatttaatttatatgctttctcttctgcatgtatagatcaattaaagtgag |
534 |
Q |
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| T |
25192348 |
atccaaacatgcaagcttataatttgtgtctctaattattaaattacactatttaatttatatgctttctcttctgcatgtatagatcaattaaagtgag |
25192249 |
T |
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| Q |
535 |
acgatattttccatgcaagctcaatttctccctaatctcactgctctaaaatgcaatcaaaaaccaagaataaggttat |
613 |
Q |
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| T |
25192248 |
acgatattttccatgcaagctcaatttctccctaatctcactgctctaaaatgcaatcaaaaaccaagaataaggttat |
25192170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 25192777 - 25192618
Alignment:
| Q |
15 |
aatatccagacacaaattcacaaggggttgttgagtgaagattccttcatctcaaaaaagcagaacaagacaaaaacataaactttcaaacaacatcttc |
114 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25192777 |
aatatccagacacaaattcacaagggattgttgagtgaagattccttcatctcaaaaaagcagaacaagacaaaaacataaactttcaaacaacatcttc |
25192678 |
T |
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| Q |
115 |
catgctccttatacaaaaaagatattatgacaaccaaacaagtcatattgagatgcaaaa |
174 |
Q |
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| T |
25192677 |
catgccccttatacaaaaaagatattatgacaaccaaacaagtcatattgagatgcaaaa |
25192618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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