View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19268_low_6 (Length: 520)
Name: NF19268_low_6
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 503
Target Start/End: Original strand, 33326212 - 33326699
Alignment:
| Q |
16 |
atacatcctgacataaaaatgaataaaaataacaagaacagcagtgttgagaatggaattgaaaacccaagcacccattccattacaaccaccaacttca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33326212 |
atacatcctgacataaaaatgaataaaaataacaagaacagcagtgttgagaatggaattgaaaacccaagcacccattccattacaaccaccaacttca |
33326311 |
T |
|
| Q |
116 |
aaaaagaaatgaagcnnnnnnncaccaacatgacacgccacgttacatcccaacaacagaatctgacagttcaaaacaaacggaaaacacgcagatcgaa |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33326312 |
aaaaagaaatgaagcaaaaaaacaccaacatgacacgccacgttacatcccaacaacaaaatctgacagttcaaaacaaacggaaaacacgcagatcgaa |
33326411 |
T |
|
| Q |
216 |
gaccaatagctgtccaaaatctataaccatagacaagagagtaaacaagtgttgcaaacagaatcgcaagaacttgaaaagactgtgaaaattcaagcca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33326412 |
gaccaatagctgtccaaaatctataaccatagacaagagagtaaacaagtgttgcaaacagaatcgcaagaacttgaaaagactgtgaaaattcaagcca |
33326511 |
T |
|
| Q |
316 |
tagaaaagaaaccaacgttgaaactgagtggttcacaagttgataaaaagacaacctacgacgatgtagaatagttaagattgttctcaacatgtgtaga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33326512 |
tagaaaagaaaccaacgttgaaactgagtggttcacaagttgataaaaagacaacctacgacgatgtagaatagttaagattgttctcaacatgtgtaga |
33326611 |
T |
|
| Q |
416 |
aaacgtgatagatagtaaacgtaagaccaaaagaagacacgaccagaaggtcgtgtacctaaggggaaacaaaggagccatcgaagtg |
503 |
Q |
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| T |
33326612 |
aaacgtgatagatagtaaacgtaagaccaaaagaagacacgaccagaaggtcgtgtacctaaggggaaacaaaggagccatcgaagtg |
33326699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 6665412 - 6665364
Alignment:
| Q |
277 |
aatcgcaagaacttgaaaagactgtgaaaattcaagccatagaaaagaa |
325 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6665412 |
aatcccaagaacctgaaaagactgtgaaaattcaagccatagaaaagaa |
6665364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 7297234 - 7297197
Alignment:
| Q |
71 |
gaattgaaaacccaagcacccattccattacaaccacc |
108 |
Q |
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| T |
7297234 |
gaattgaaaacccaagcaccaattccattacacccacc |
7297197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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