View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19268_low_9 (Length: 488)
Name: NF19268_low_9
Description: NF19268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19268_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 79 - 472
Target Start/End: Original strand, 6684418 - 6684814
Alignment:
| Q |
79 |
cattggaggtaattaactttacttgagatgtatctgctgcactaatggtaaacatctcttctaactgaaattcaaattttaatttatcacat--tataga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6684418 |
cattggaggtaattaactttacttgagatgtatctgc---actaatggtaaacatctcttctaactgaaattcaaattttaatttatcacatattataga |
6684514 |
T |
|
| Q |
177 |
agtctaatattttgtgctaaacccaatgttagcttcatttaaatatttcttatctacttaatgtggaactcgcaagggttgtcttatctctcacaagtaa |
276 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6684515 |
agtctaatattttctgctaaacccaacgttagcttcatttaaatatttattatctacttaatgtggaactcacaagggttgtctaatctctcacaagtaa |
6684614 |
T |
|
| Q |
277 |
taataaataa----ataaaatgaaaactcctaatatgtgatgttagagataaggatagtaggatacttctgcgatggggattggctgatttagtttatgt |
372 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6684615 |
taataaataagtatataaaatgaaaactcctaatatgtgatgttagagataaggatagtaggatacttctgcgatggggattggctgatttagtttatgt |
6684714 |
T |
|
| Q |
373 |
tgtagaaactgcaaagacaaacgtaaagaaatgtccttttctttttccctttttattgtttatttggtttatatattctatcaaaaagaccacgagtatt |
472 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6684715 |
tgtggaaactgcaaagacaaacgtaaagaaatgtcctttcctttttccctttttattgtttatttggtttatatattctatcaaaaagaccacgagtatt |
6684814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University